Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00050 ATGGGTAGAACTCCTTGCTCTGATAAAGAGCAAATAAACAAAAAGGGACCTTGGTCCAAAGAGGAAGATGAACTCCTCATCAACTACATCAACCTTCATGGCCAAGGCAATTGGAAATCCATTCCCAAAGCAGCAGGCTTGCTTCGATGTGGCAAAAGTTGCAGACTCAGATGGACGAATTACCTGAGACCCGATCTCAAGAAAGGGAACTTTACCGAAGAAGAAAGTAACCTCATCATTCACCTCCATAGCTTACTTGGAAACAAatggtctcaaatagctacaagtttacccggaagaacagataacgagatcaagaactactggaaAAGCCACCTCAAGCGTTACCTCTATGCCCTAGGAATCGATCCTGTAACCCATAAACCATTCAAGGAAGACACCAACACCACAAGTACTCCACCAAATAATTCTATGGCCACCACCACAAGCACCATCCCCCGCATCTATTATTTTAATGTCTTTCTCAATTCAAAGGTGCATATTAGCGCCGATGATGATTATTCAGCTGATGGTGGTGCAGACTCAAATAGCAGCAGTGGTGTTACCATAGAGGAAGCTTCTCCTCAAGTCAACTTGGAGCTTTCCATTGCTCCACCCTCTCAGCCTCATGAAGATGCTGCTTCCGTGAAACCCTGA 657 0.4079 MGRTPCSDKEQINKKGPWSKEEDELLINYINLHGQGNWKSIPKAAGLLRCGKSCRLRWTNYLRPDLKKGNFTEEESNLIIHLHSLLGNKWSQIATSLPGRTDNEIKNYWKSHLKRYLYALGIDPVTHKPFKEDTNTTSTPPNNSMATTTSTIPRIYYFNVFLNSKVHISADDDYSADGGADSNSSSGVTIEEASPQVNLELSIAPPSQPHEDAASVKP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00050 218 Gene3D - 70 116 - -
Gma08g00050 218 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Gma08g00050 218 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 213 - -
Gma08g00050 218 MobiDBLite consensus disorder prediction 178 203 - -
Gma08g00050 218 MobiDBLite consensus disorder prediction 175 218 - -
Gma08g00050 218 SMART sant 67 115 IPR001005 -
Gma08g00050 218 SMART sant 14 64 IPR001005 -
Gma08g00050 218 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma08g00050 218 Gene3D - 14 67 - -
Gma08g00050 218 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gma08g00050 218 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gma08g00050 218 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gma08g00050 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma08g00050 218 CDD SANT 70 113 IPR001005 -
Gma08g00050 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Gma08g00050 218 PANTHER TRANSCRIPTION FACTOR MYB7 1 213 - -
Gma08g00050 218 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00050 Gma-Chr8 439351 440727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00050 1 216 MYB Transcription Factor Family AT2G16720 49.074 1.49e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma08g00050 Myb_DNA-binding 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00050 K09422 - gmx:100791004 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00050 08 439351 440727 Gma04g01985 04 50285177 50286934 PCT
Gma08g00050 08 439351 440727 Gma06g01430 06 13591717 13593354 PCT
Gma04g01985 04 50285177 50286934 Gma08g00050 08 439351 440727 PCT
Gma06g01430 06 13591717 13593354 Gma08g00050 08 439351 440727 PCT