Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00038 ATGTTTCGCCAAAATTTGAGCAGGGGACCTCTCAAAATATTGACGAGGTGGCTCATATTCCTTACTATCTTACAAGTCAGTTGTGCTATCAAAGATCCTGATGTAGAAGGTGAAGCTCTGCTTGATCTTTTGCATTTCCTCAATGATTCCAATAAGCAAATAACGGACTGGGACAGTTTTTTAGTGAGCCCGTGCTTCAGTTGGTCTCATGTCACTTGTAGAAACGGGCATGTCATATCCCTGGCCTTGGCTTCAGTTGGATTTTCTGGAACGCTTTCTCCCTCAATTATCAAATTGAAGTATTTGTCTAGCTTAGAATTGCAGAACAACAACCTTTCTGGACCCTTGCCTGATTACATTTCCAACTTGACAGAGCTACAATATCTAAATCTTGCTGACAACAATTTTAATGGTTCTATACCAGCTAAATGGGGTGAAGTACCCAATCTAAAGCATCTGGATCTTTCATCTAATGGTCTTACGGGAAGCATCCCAAAGCAACTCTTTTCAGTTCCATTGTTTAACTTTACAGATACGCAACTTCAGTGTGGCCCTGGCTTCGAGCAGCCTTGCGCTTCTAAATCTGAAAATCCAGCTTCAGCTCACAAATCAAAATTGGCAAAAATTGTACGTTATGCAAGTTGTGGTGCATTTGCACTTCTGTGTCTTGGGGCTATCTTTACGTATCGACAACATCAAAAGCATAGGCGAAAAATTGATGTCTTTGTTGATGTTTCAGGTGAAGACGAGAGAAAGATTTCTTTCGGGCAATTGAGAAGATTTTCTTGGCGTGAACTTCAACTTGCCACTAAAAATTTCAGTGAAGGCAATGTAATTGGTCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTACTCTCTGATAACACAAAAGTCGCTGTGAAACGCCTCATTGATTATCACAATCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTAATAAGTGTTGCAGTTCATAGAAACCTCCTAAGACTAATTGGCTTCTGCACAACCACAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTTAGTGTAGCATATCGACTGAGAGATTTAAAACCTGGTGAGAAAGGCTTGGACTGGCCAACAAGGAAACGCGTGGCTTTTGGCACTGCCCATGGTTTGGAGTATTTACATGAGCAATGCAATCCCAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTACTAGATGATGAATTTGAAGCTGTTCTAGGTGATTTTGGGCTAGCCAAGCTGGTTGATGCAAGGATGACTCATGTCACCACTCAAGTTAGGGGCACAATGGGTCACATTGCCCCAGAGTATTTGTCCACTGGAAAATCTTCAGAAAAGACTGATGTTTTTGGATATGGCATAACACTTCTTGAACTTGTCACCGGTGAGCGTGCATTAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTGATTGATTATGTGAAAAAGCTGCTGAGAGAGAAAAGGTTGGAGGACATTGTTGATAGAAATTTGGAGAGTTATGATCCAAAGGAAGTTGAGACGATTCTACAGGTTGCATTGCTTTGCACCCAAGGCTATCCCGAGGATCGTCCAACCATGTCAGAGGTGGTGAAAATGCTGCAGGGAGTTGGCTTGGCAGATAGATGGGCTGACTGGCAGCAACTTGAAGAGGCTAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGAATGATGAGTCTACTCTTGATCAAGAAGCCATACAGCTTTCCAGAGCAAGATAA 1788 0.4228 MFRQNLSRGPLKILTRWLIFLTILQVSCAIKDPDVEGEALLDLLHFLNDSNKQITDWDSFLVSPCFSWSHVTCRNGHVISLALASVGFSGTLSPSIIKLKYLSSLELQNNNLSGPLPDYISNLTELQYLNLADNNFNGSIPAKWGEVPNLKHLDLSSNGLTGSIPKQLFSVPLFNFTDTQLQCGPGFEQPCASKSENPASAHKSKLAKIVRYASCGAFALLCLGAIFTYRQHQKHRRKIDVFVDVSGEDERKISFGQLRRFSWRELQLATKNFSEGNVIGQGGFGKVYKGVLSDNTKVAVKRLIDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTTTERILVYPFMENLSVAYRLRDLKPGEKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERALDLSRLEEDEDVLLIDYVKKLLREKRLEDIVDRNLESYDPKEVETILQVALLCTQGYPEDRPTMSEVVKMLQGVGLADRWADWQQLEEARNQEFSLMTHQFVWNDESTLDQEAIQLSRAR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00038 595 SUPERFAMILY Protein kinase-like (PK-like) 252 547 IPR011009 -
Gma08g00038 595 ProSiteProfiles Leucine-rich repeat profile. 149 171 IPR001611 GO:0005515
Gma08g00038 595 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Gma08g00038 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Gma08g00038 595 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Gma08g00038 595 PANTHER LRR RECEPTOR-LIKE KINASE 13 595 - -
Gma08g00038 595 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Gma08g00038 595 Pfam Protein kinase domain 274 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00038 595 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Gma08g00038 595 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Gma08g00038 595 ProSiteProfiles Protein kinase domain profile. 273 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00038 595 SUPERFAMILY L domain-like 37 170 - -
Gma08g00038 595 SMART serkin_6 273 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00038 595 Gene3D Transferase(Phosphotransferase) domain 1 350 565 - -
Gma08g00038 595 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00038 Gma-Chr8 304385 310748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00038 18 595 Receptor kinase-like Gene Family AT5G10290 56.033 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gma08g00038 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00038 - - gmx:100800886 1189.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01927 05 40665801 40671612 Gma08g00038 08 304385 310748 GST