Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00017 ATGGCGAAGAACAACAAGAGCACTAAGAAACCGATGAGCCTCAACGACAGTCACTATCGCTTCCTACAGGAGCACTCTGCTCCTCCCAAACCCACCTTCGATGAAGAATCGATCAAAGCCTCCACCCGTAAACAACACCAAAACATCCCCCAGTTCTCCGCAATCACCGACTTCGATTCTCCATTCGGGTTAAGCTCGGACGAGAAACAACAACAAGCTCCATCCCATgatattccccaattttcgcttaactctactcctaggccaaacttggacaagaaacacgaaccaatcaagtttcatgatgatgacgaagaagaagaagaagttccaccaaacgatattccccaattttcgattaactccaatcctagtcaaaattcggacgtgaaacgtgacccaatcaagtttcatgatgatgaagaagaagaagCTCCACCCGACGCGGTTAATTTCCCCCCTAAGGAAGAAAAGAAGGCGAAGGTGAAAGTACAGGGGCGGCGTCGCCTCTGCAAGGTTGTGCATGAAGATGCAGGCAAAAGTGTGGCGGTTGACGAGTCCAAGTTTGATGAACTCATTGACCTTGATTCTCCGATTCCTGCACCGAGAAAGGTGATCCAGATTGAGGAGAGCGGGGGCAAGAATGAAATTACGGATATTTTGAACGAACTAAACTCTAAGTTTGAGCTGCTGTCGGTTGAGAGGAAGCCGAAGCCAAAGCATGTTGAAGGTCTGGTTGGAGGAGAAAAAAATTGTGATGATGATGGTTCAGAGTTTGGGAGTGCAGGTTCTTCGTTTTCTCCACAACAGGAGAGCTTGTCAGAGGGTACGAAGAATGGTGATGGGGATGATATTGAGTATGATGCAAATGATTCTGTTCAAGAGTTGGATCATTTTGAGCCTGAGACTGATGGTTCTATAACTTTTACTGGCCCCAGATCGACTTATAAGTTGCAGGCTAAAATTGCGAAAATGTTGTATCCGCATCAGCGGGAGGGGTTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGTGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGTTTTCTAGCTGGACTGTTTCATTCTCGTTTAATTAGAAGGGTGTTGATTGTAGCCCCCAAAACTTTATTGCCCCATTGGATCAAAGAGTTGTCAGCTGTGGGTCTATCTGAGAAGACAAGAGAATATTTTGGAACTTCTACAAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAATGGAGTTCTTCTCACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTACAGGGGAATAATTATTTTGATGATGAGGATAATGAAGAAGGCGCAACATGGGACTACATGATACTTGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATTAGCGGCACTCCTTTGCAAAATAACCTGAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTTGGTGACCACAAATGGTTCAAAGAAAGATTTGAAAATCCCATACTTCGTGGAAATGACAAGCATGCTTCTGACAGGGAGAAGCGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGATCGTATTCATCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGAGAAAACAACTGCAAAACTTTCTCAGAAACAGGAGATCATTGTGTGGCTTCGACTGACCAGTGTTCAGCGGCATCTGTATGAAGCATTCTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACGATTTTGAAGAAAATATGCGATCATCCACTTTTGTTGACAAAGCGAGCTGCGGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGCAAATGTTGCAGAAAAATTGGCAATGCACATAGCAGATGTTGCAGGCACAGATAAGTTTAAAGATGAGCAAGATGTGTCATGCAAAATTTCCTTCATTATGTCATTATTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTAGTATCTGAAGGTTATGACTTTTTACGAATTGATGGCACCACAAAAGCCACTGACAGACTAAAGATTGTTAACGATTTCCAAGAAGGTTTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGCGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGGGCATATCGAATTGGTCAAAAGAAAGATGTTCTGGTATATAGACTGATGACATGCGGAACTGTTGAAGaaaagatctacaggaagcagGTATACAAGGGAGGATTATTCAAAACTGCTACTGAACATAAAGAACAAATTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTTAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAACATACAGTTGATGACTCTTTCAGAGCACATCTAGAGTTTTTGAAAAGTCACAGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCCAAGACAGCGCCAGTTCGAACTGATCCTGAGGATGATGAAGTTACAAGGAATCATGGGGCCAAATATGTTGGAACTTCCAGATCACCTTCAAATGAGCATGCTGCTTATGGCCCGGAGTTTGCATTTAATCCTAAGGATGTCAGGTTAAGCAAAAAAGGTTCTTCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAAGAGTATCTCTCAAACACTCTCAAATATGGCTTCTAAATTACCTGACAAGGGCGAGAAACTACAGAAACGGCTTGCCGAGTTGAATTTAGAGCTCGCTGAACTGAAGAGGGAAGAAAGAAATGTGGTTGATTTGGATGATTTTACTACTGAATTTCAACGGGTAAACGCGTTTCACAATCAAGAGAATTTCGCACATCGTAACAACCCAATTCATCATTTAAGCTCACACATACAATTGTAG 3159 0.3966 MAKNNKSTKKPMSLNDSHYRFLQEHSAPPKPTFDEESIKASTRKQHQNIPQFSAITDFDSPFGLSSDEKQQQAPSHDIPQFSLNSTPRPNLDKKHEPIKFHDDDEEEEEVPPNDIPQFSINSNPSQNSDVKRDPIKFHDDEEEEAPPDAVNFPPKEEKKAKVKVQGRRRLCKVVHEDAGKSVAVDESKFDELIDLDSPIPAPRKVIQIEESGGKNEITDILNELNSKFELLSVERKPKPKHVEGLVGGEKNCDDDGSEFGSAGSSFSPQQESLSEGTKNGDGDDIEYDANDSVQELDHFEPETDGSITFTGPRSTYKLQAKIAKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGFLAGLFHSRLIRRVLIVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDNGVLLTTYDIVRNNSKSLQGNNYFDDEDNEEGATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDHKWFKERFENPILRGNDKHASDREKRVGSSVAKELRDRIHPYFLRRLKSEVFNQDDEKTTAKLSQKQEIIVWLRLTSVQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEANVAEKLAMHIADVAGTDKFKDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRKMLNLIQECLVSEGYDFLRIDGTTKATDRLKIVNDFQEGFGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQHTVDDSFRAHLEFLKSHSIAGVSHHSLLFSKTAPVRTDPEDDEVTRNHGAKYVGTSRSPSNEHAAYGPEFAFNPKDVRLSKKGSSPSSAGKLTESEIKDKIKSISQTLSNMASKLPDKGEKLQKRLAELNLELAELKREERNVVDLDDFTTEFQRVNAFHNQENFAHRNNPIHHLSSHIQL 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00017 1052 MobiDBLite consensus disorder prediction 43 88 - -
Gma08g00017 1052 PANTHER SNF2/RAD54 FAMILY MEMBER 297 993 - -
Gma08g00017 1052 MobiDBLite consensus disorder prediction 1 163 - -
Gma08g00017 1052 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 338 513 IPR014001 -
Gma08g00017 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 563 IPR027417 -
Gma08g00017 1052 Gene3D - 304 562 IPR038718 -
Gma08g00017 1052 Pfam Helicase conserved C-terminal domain 683 795 IPR001650 -
Gma08g00017 1052 Coils Coil 990 1017 - -
Gma08g00017 1052 CDD SF2_C_SNF 675 806 - -
Gma08g00017 1052 PANTHER OS04G0692700 PROTEIN 297 993 - -
Gma08g00017 1052 Gene3D - 582 881 IPR027417 -
Gma08g00017 1052 SMART ultradead3 321 524 IPR014001 -
Gma08g00017 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 857 IPR027417 -
Gma08g00017 1052 MobiDBLite consensus disorder prediction 258 276 - -
Gma08g00017 1052 MobiDBLite consensus disorder prediction 241 288 - -
Gma08g00017 1052 MobiDBLite consensus disorder prediction 241 256 - -
Gma08g00017 1052 SMART helicmild6 712 795 IPR001650 -
Gma08g00017 1052 Pfam SNF2-related domain 329 633 IPR000330 GO:0005524|GO:0140658
Gma08g00017 1052 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 686 845 IPR001650 -
Gma08g00017 1052 MobiDBLite consensus disorder prediction 907 939 - -
Gma08g00017 1052 MobiDBLite consensus disorder prediction 115 130 - -
Gma08g00017 1052 MobiDBLite consensus disorder prediction 131 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00017 Gma-Chr8 127434 136450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00017 326 845 RAD5 or RAD16-like Gene Family AT3G16600 24.872 7.38e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma08g00017 SNF2_N 1.8e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00017 K20093 - gmx:100779283 2009.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01906 05 40468757 40474341 Gma08g00017 08 127434 136450 GST