Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00012 ATGGAAGATGAGAGCCATAATAACATTTTGCCAAATGGATTCAACACAGGAAGCACCGAAAGTCCTTGCTTAAAGACAAGCACCATGACCACACAACACAACAATAACAATAATCATCAGAACCATAGCAACAAAGAACAGGACCGGTTTCTCCCTATAGCCAACGTGGGAAGAATCATGAAAAAAGTGATTCCCCCAAACGGCAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCCGAGTTCATAAGTTTTGTGACAGGGGAAGCTTCTGACAAATGCCAGAGGGAAAAGAGAAAGACCATCAATGGAGACGATGTCATATGGGCCATCACAACCCTAGGCTTTGAGGATTACGTGGAACCCTTGAAAACTTACCTCCAGAAATATAAAGAGATAGAAGGAGAAAAACTTAACATTCCGAAGCAACTACGTTCTGAACAAAGGCTACATCAACATCAGCAAAACCATAATAATAATCACGACGAAAATAATAATCAACCATTCAATGGTGCATATGCCTCATCAAATCTCATTTCTCAGCCTCCTTATGTGCCCACTGATCAGAAGTTTTCACTGCCCTTCTCCCCAAACTCGATTCAGAATCAGCTACGGCAGCAAGAACAGATTGATTCAGTGGGGCACTGGTACGAATAG 666 0.4159 MEDESHNNILPNGFNTGSTESPCLKTSTMTTQHNNNNNHQNHSNKEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKTYLQKYKEIEGEKLNIPKQLRSEQRLHQHQQNHNNNHDENNNQPFNGAYASSNLISQPPYVPTDQKFSLPFSPNSIQNQLRQQEQIDSVGHWYE 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00012 221 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gma08g00012 221 MobiDBLite consensus disorder prediction 1 46 - -
Gma08g00012 221 MobiDBLite consensus disorder prediction 162 184 - -
Gma08g00012 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
Gma08g00012 221 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 214 - -
Gma08g00012 221 MobiDBLite consensus disorder prediction 8 41 - -
Gma08g00012 221 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Gma08g00012 221 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Gma08g00012 221 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Gma08g00012 221 SUPERFAMILY Histone-fold 47 169 IPR009072 GO:0046982
Gma08g00012 221 MobiDBLite consensus disorder prediction 151 184 - -
Gma08g00012 221 Gene3D Histone, subunit A 38 174 IPR009072 GO:0046982
Gma08g00012 221 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 214 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00012 Gma-Chr8 90088 90753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00012 45 219 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.761 1.50e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma08g00012 CBFD_NFYB_HMF 6.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00012 K08065 - gmx:100778216 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01902 05 40438260 40438883 Gma08g00012 08 90088 90753 GST