Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00001 ATGTATGTGAAAACGGCTTGTTGTTTCACCCCTAGCCTGCGGAAAATGCTTTATTGTGTTTCGGATATCAATTTAAAGTTCACAGTTATGCGAATAGCCAGTGCATTAGTGAATGGCAGCGCTCTTCATTTCCACTTACCTAGATTTCTATATGTGCGTCATCATTCATCAATCAAGTTGTTTGTCACAGGGCTTTCCTATGATACCAATGAACCGGTTCTGAGAGATGCCTTTGGGCAACATGGTGAAATCATTGAAGTTAAAGTAATATGTGATCATGTGACTGGAAAATCAAGAGGATATGGATTTGTGCGGTTCCTTTCTGAAACTATAGCTGCTGCAACTCACAAAGAAATGAATGGCCAGATACTGGATGGAAGATGCATTCGAGTGAGTTATGCACACAAAGATTTGGGGAACCTATCTCTCTCCGCGGCTCTCAAACTCTCTCACTGCTCCTCCGATGATGCCCTTGACGCTCCTGTCAAAACCCTAACCAATGGCTTCGGTTCCAAACCTGCCTTCGAACCTCGGGTTTTGAAGCGCACCCGTGGCTCCCTGGATCGGGTCAAGAAGCCCCCCACCGCCGACAAGGCCTTCCAAGATTGCCTCAAAGATCCTTTTCTAGTTGGCGCTCCCAAGATGGGTGAATGTTGTTTTTGCTGCCATTTTATTTACCCTGGGGATGATGAGCTCTTGTGTTCTGTTCGAGGATGTGACGCGCGCTACCATTCTGAATGTGCAAAAGAAGAAGCTGTTGGGCCTTCCACTCTGAAAAAATTCAAGTGTCAACAACATGTAGGCTTTTAG 810 0.4556 MYVKTACCFTPSLRKMLYCVSDINLKFTVMRIASALVNGSALHFHLPRFLYVRHHSSIKLFVTGLSYDTNEPVLRDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFLSETIAAATHKEMNGQILDGRCIRVSYAHKDLGNLSLSAALKLSHCSSDDALDAPVKTLTNGFGSKPAFEPRVLKRTRGSLDRVKKPPTADKAFQDCLKDPFLVGAPKMGECCFCCHFIYPGDDELLCSVRGCDARYHSECAKEEAVGPSTLKKFKCQQHVGF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00001 269 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 32 137 - -
Gma08g00001 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 130 IPR000504 GO:0003723
Gma08g00001 269 Gene3D - 51 138 IPR012677 -
Gma08g00001 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 136 IPR000504 GO:0003723
Gma08g00001 269 SMART rrm1_1 59 132 IPR000504 GO:0003723
Gma08g00001 269 SUPERFAMILY RNA-binding domain, RBD 55 136 IPR035979 GO:0003676
Gma08g00001 269 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00001 Gma-Chr8 6876 8991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00001 60 137 Eukaryotic Initiation Factors Gene Family AT4G34110 42.308 9.38e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00001 K13195 - gmx:100802141 437.958