Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02626 ATGAAAGTATACTTTGGGGGGTTTCAGGGCACGCATTCTATCGCTGTTTCTCTCGAATCAACAAAACGCCACCGTTTCATTGATCTACTTCCTCCAAGGCCAGGTCTCCAAGAATTGGTACCAATTCAAGCTGCAAATATACTTGAACTTCAACTTATCCCACATTCTCCACTCTCAATGGCTTCAACTCTCAAATCTGGCGGAATTCATACAGGGGCAATCAATGATGATTTATACAAGGAATTGTGGCATGCATGTGCTGGTCCCCTTGTCACTCTCCCTCGTGAAGGGGAACGAGTCTATTACTTTCCACAAGGTCACATGGAACAGCTTGAGGCATCTATGTATGAGGGATTAGAGCAGCAGATGCCTTCCTTCAACCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGACCAGCCCTGATGATCCTCTGCCTGAATCTCCGAGGGTCAAGATCCATTCATTTTGCAAGACACTTACTGCTTCTGACACAAGTACCCATGGGGGTTTCTCTGTTCTTCGAAGACATGCAGACGATTGTCTGCCTCCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTACATGGGAATGAATGGCATTTTAGGCATATTTTTCGAGggcaacccaagcgccacttacttaccactgggtggagtgtctttgtcagttccaaaaaattagctgctggtgatgcctttatattcttaaggcaactgcgagttggggttaggagggtcatgagacagcaaagcaatgtgccttcttctgttatatctagtcACAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGTGTCAACAAGTATCTGGAAGTTCAGAGTCATAAACTCTCTGTTGGGATGAGATTCAAAATGCGATTTGAGGGTGATGAAATTCCCGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCATCGTCGGTCTGGCCTGATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCATCCTCAATTTTGCGTCCTGACAGAGTTTCATCATGGGAATTGGAGCCACTTGTGTCTACCACTCTTGCAAACTCGCAGCCAACCCAAAGAAACAAGAGGGCACGGCCTCTCATTCTACCTTCTACAATGCCCGATTCTTCTTTGCAAGGCATATGGAAATCATCAGTTGAATCTACCTCTTTCTCTTATTGTGACCCCCAACAAGGACGTGGCCTCTATCCATCACCAAAGTTCAATTCTTCTGCAACTAACTTTATTGGTTTTAGTGGGAATAGCTCTGTGGGATCTCCTTCCAACAAATCAATATATTGGTCTAATAGGATGGAAAATAACTTGGAATCTATTTCAGCTATAGCTCTTAAAGAAGCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGTAGACTCTTTGGGATTCAGCTACTTGAGAATTCTAATGCAGAAGGAAATCTACAAACAGTCACTTTGTCAGGAAGGGTGGGTGATGATAGGTCGGTTCCATCTTTAGATGCTGAGTCTGATCAACATTCTGAACCATCAAATGCCAACCGATCTGATATTCCTTCAGTTAGTTGCGATGCTGAAAAATCATGCCTGCAGTCTCCCCAGGAGTCACAAAGCAAGCAAGTAAGGAGCTGTACAAAGGTAGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTAACACGATTTGATGGATATGAGGATCTTCTCAGGAAATTGGAAGATATGTTTAACATCAAGACTGAGCTCTGTGGGTCCCTAAAAAAATGGCAAGTTGTCTACACTGATAATGAAGATGATATGATGATGGTTGGAGACGATCCGTGGGATGAGTTCTGTAGTGTTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAAGAAGCTTTCACCGAAAATAAGACTTCCAATGAATGAAAAAGTTAACCCAAGCAAGCAGGATTCAGAAGCAATAGTGAATCCTGAGGACCAGTCATCTAATATGGGGCCCAGCTGCTAG 2193 0.4045 MKVYFGGFQGTHSIAVSLESTKRHRFIDLLPPRPGLQELVPIQAANILELQLIPHSPLSMASTLKSGGIHTGAINDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMYEGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPESPRVKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLAAGDAFIFLRQLRVGVRRVMRQQSNVPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEVQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSSSVWPDSEWRSLKVQWDEPSSILRPDRVSSWELEPLVSTTLANSQPTQRNKRARPLILPSTMPDSSLQGIWKSSVESTSFSYCDPQQGRGLYPSPKFNSSATNFIGFSGNSSVGSPSNKSIYWSNRMENNLESISAIALKEAGEKRQGTGNGCRLFGIQLLENSNAEGNLQTVTLSGRVGDDRSVPSLDAESDQHSEPSNANRSDIPSVSCDAEKSCLQSPQESQSKQVRSCTKVVHMQGMAVGRAVDLTRFDGYEDLLRKLEDMFNIKTELCGSLKKWQVVYTDNEDDMMMVGDDPWDEFCSVVRKIFIYTAEEVKKLSPKIRLPMNEKVNPSKQDSEAIVNPEDQSSNMGPSC 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02626 730 ProSiteProfiles PB1 domain profile. 606 699 IPR000270 GO:0005515
Gma07g02626 730 SUPERFAMILY DNA-binding pseudobarrel domain 179 308 IPR015300 -
Gma07g02626 730 Gene3D - 600 695 - -
Gma07g02626 730 MobiDBLite consensus disorder prediction 552 583 - -
Gma07g02626 730 SUPERFAMILY CAD & PB1 domains 611 683 - -
Gma07g02626 730 MobiDBLite consensus disorder prediction 701 730 - -
Gma07g02626 730 Gene3D - 342 417 - -
Gma07g02626 730 Pfam AUX/IAA family 596 696 IPR033389 -
Gma07g02626 730 MobiDBLite consensus disorder prediction 566 583 - -
Gma07g02626 730 Pfam B3 DNA binding domain 183 271 IPR003340 GO:0003677
Gma07g02626 730 Pfam Auxin response factor 305 388 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma07g02626 730 PANTHER AUXIN RESPONSE FACTOR 9 66 706 - -
Gma07g02626 730 Gene3D - 180 281 IPR015300 -
Gma07g02626 730 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 66 706 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma07g02626 730 MobiDBLite consensus disorder prediction 706 730 - -
Gma07g02626 730 ProSiteProfiles B3 DNA-binding domain profile. 183 286 IPR003340 GO:0003677
Gma07g02626 730 SMART B3_2 183 281 IPR003340 GO:0003677
Gma07g02626 730 CDD B3_DNA 181 279 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02626 Gma-Chr7 48403990 48410966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02626 60 729 B3 DNA Binding Superfamily AT1G59750 67.899 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma07g02626 AUX_IAA 1.5e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g02626 K14486 - gmx:100815450 1330.85