Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02617 ATGTCAGAAATGCGGGTATCTGAGCTTCACTTGAAGAAGGAACTCACCCAAATCCGCAAGGCTGCTCGAGTGCTCAGAGATCCTGGCACCACTTCTTCTTGGAAGTCACCTCTCAGTTCATCAAGATCTGTGGCTGCATGGAACAACGACACTGCCAGTAGAAGGCTCACTACTATTTCACAACTGGGTCCCAACAACACCAATGACAAGGACAAGAGGGTGTTCTTGTACAACTGGAAGAACTACAAATCTTCCAGTGAGAAATACAACGATGAGGAGGAAGAAGAAGAAGATGATGATGGATCTTCTTCGCTTCTCGGGGACAGAGACAGAGATAGTTTGAGTGATGCTCGCAATGGTTGTGACTCAAAGAGTGATACTTACTTGGCTGCTGCCGTTGGTGGTGGTGGTGGTGGTGGCACTCGCTCTTCCATTTTCCGATGTGGGGATGCCAATCTTGTTTCCAGAAGAACGGTTCCCGTTAAGAAAAAGAGTAAGAAAAATAACCCACATTTTGATTTTTTAGCAAAATATCAACACCATAGACCAGGAAAAAAATTTGTGAGTTCTTCCAAGGCATTGCTAGAAGGGCATCCTTCGCCTTTTTTTAACAGGGATGACTCGGTTGAACACTCTGATGATGATACCGAGGATTACACTAATTCCGAGGGTGTGAGACCAATTTCGGGGACTTCCCCTTTGCTTCTCAAACTCAGGCAAAAGAACTGGTCTCGCTCTTCCTCTAAGTTTTTGAGAAGAAGCAGGAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATAGGTACGGTCACCGCTATCCCAGCACTCTTGGATCCTGGGATGGAACCACCACATCGGTCAATGATGGCGACGGCGATGATGAGATTGATGATCATTTGGATTTGCCAGGCCGTCAAGGATGTGGAATTCCTTGCTACTGGTCCAAGAGGACTCCTAAACATAGAGGCATGTGTGGGAGTTGTTATTCTCCTTCACTGTCGGATACTTTGAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAAACTATTTATCCAAGGCACCGGAGATCAGCTTCGGCTTCTCACAAGCGAAGACTCTCTTTGAGGAGTGCTAGAGGTGTTATTCCATTGCTCACTAATAGTGGTGATGTTAGAGAAGGGTCATCTGTTGGAACCGGTAGGAGTGATGACGAGCTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCATCGAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAATATGATGGCACGCCAGAAAATAATCGGAGCTTCAGCCAGAAGTATAGGCCCATGTTCTTTGGTGAACTGATCGGGCAGAATGTTGTGGTTCAGTCACTTATCAGTGCTGTTTCAAGGGGACGAATTGCTCCCGTCTATCTGTTTCAAGGTCCCCGTGGGACTGGCAAAACATCAACAGCTAGGATATTTGCTGCTGCTTTGAATTGTGCGAGTCCTAATGAGAGCAAACCTTGTGGCTACTGCAGAGAATGTGTTGATTTCATTTCTGGTAAGAGCAGTGATCTATTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTACTAAAACGATTGTCAACTGGATCATCATCAGCCTCCCCACAATATACAATTTTTGTTATTGATGAGTGTCACCTGTTGCCCTCCAAGACATGGCTGGGATTTCTTAAGTTTCTGGAAGAACCACCGCAGCGAGTTGTATTCATTTTTATAACATCTGATCTTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGACCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAACTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTGGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGCTAGCAATGTCATCAGATACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCCGGTCTTATCATGGACATCATTGCTGGATCATATGCAGTCATTGACACCAAACCTGATGATTCATTTTTTGGTGGACGGAGTTTGAATCAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCAGAGAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCACAGCAACTCTATTGCAGCTTGGTTCTACACCTTCTCCTGATCTTACTCAGTCAAGCAGCAGTAGGAGACAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCAAGAGACGTTACATCTTGCATGCATAAGTCAGACCCTCAATATGTGCCTCGAAAGTCAGCATACACTGCATCCCAGCAAAAAGCCGTGAATGAGAGTTCCCACCATCAAAAGGATATATCCTCAAAGATTGAAGGCTTGAAATCAAAGCCATCAAACGGCCCAGTCATAGATGATGGCTCCACAGTGGTCTCATCTGATGACCTTATGGTTGAGAATAGAATGTTTAGGTGCATAGATTCAGGGAAGTTATGTGACATCTGGGTGCATTGTATTGAGAGGTGTCACTCGAAGACATTGAGGCAGCTGCTACACAATCATGGAAAGCTTGTGTCTGTATGTGAAGTAGAAGGTGTTTTGGTAGCATATGTTGCTTTTGGAGATGCCGATATTAAAGTTAGGGTTGAGAGGTTTTTGAGAAGCATTACAAACTCTATGGAAATGGTTCTTAGGCGCAATGTGGAGGTAAGAATAATCCATTTGCCAGATGGTGAAGGTGAAAATCAAGTTAATCTATTGGGCCTAAAGCAGGCAGAGTCAACAGTGGCTGGTGAGAAGGAAGAAAGAAAGGGTCATATGAACAGAACGGAGTCTTATTCTAGTTTTCCTCCTTTACTGGATGGAAACCTTCAATCTACCAATGCTTCATCAGATATTTTGGCTGAAGGAAATGGTGTGAAGGAGAGGAGACAGGATAATCCAATGCAAAGAATTGAATCCATCATTCGTGAACAGAGGCTGGAAACTGCCTGGTTACAGGCAGTAGAAAAGGGTTCCCCTGGATCATTGAGTCGGTTGAGACCTGAGGAGAATCAAGTACTGCCACAGAATGCTGTGGACCCAATGGAGTCCATGGATTCTACAAGATTTGCCTCTCACCAGCATTGGGAAGATGAACTGAATAATGAAGTCAAAGTTTTAAGCCTTAAAAATGGAAGGGTCCCACAGAAGGATCAGATTGGTCGAAAGGCAGATCGTTATCCCATGTCACCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGACAATCTGGGATATGAATCAGGGTCAGGAGCTGGGGGTTGTGGATTTTTATGTTGGAATAAGTCCAAGCCTAGAAGGGTAGTAAAGGTCAAAGGTGGCACCCCAGTTAGAGCGCGTAGAGCTGCAACTTTTACGTTGTTTGGTGACTGCACTAAGCCAAAGAAAAGGGAGAGGAGAAGATAA 3723 0.4408 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNNDTASRRLTTISQLGPNNTNDKDKRVFLYNWKNYKSSSEKYNDEEEEEEDDDGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAAVGGGGGGGTRSSIFRCGDANLVSRRTVPVKKKSKKNNPHFDFLAKYQHHRPGKKFVSSSKALLEGHPSPFFNRDDSVEHSDDDTEDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYDGTPENNRSFSQKYRPMFFGELIGQNVVVQSLISAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPNESKPCGYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTIFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRSLNQSELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSCMHKSDPQYVPRKSAYTASQQKAVNESSHHQKDISSKIEGLKSKPSNGPVIDDGSTVVSSDDLMVENRMFRCIDSGKLCDIWVHCIERCHSKTLRQLLHNHGKLVSVCEVEGVLVAYVAFGDADIKVRVERFLRSITNSMEMVLRRNVEVRIIHLPDGEGENQVNLLGLKQAESTVAGEKEERKGHMNRTESYSSFPPLLDGNLQSTNASSDILAEGNGVKERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEENQVLPQNAVDPMESMDSTRFASHQHWEDELNNEVKVLSLKNGRVPQKDQIGRKADRYPMSPSLLHDNSLATISGKDNLGYESGSGAGGCGFLCWNKSKPRRVVKVKGGTPVRARRAATFTLFGDCTKPKKRERRR 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02617 1240 Coils Coil 1010 1030 - -
Gma07g02617 1240 CDD AAA 471 629 - -
Gma07g02617 1240 SMART AAA_5 489 639 IPR003593 -
Gma07g02617 1240 Coils Coil 768 795 - -
Gma07g02617 1240 MobiDBLite consensus disorder prediction 809 823 - -
Gma07g02617 1240 Pfam DNA polymerase III, delta subunit 472 632 - -
Gma07g02617 1240 Pfam DNA polymerase III subunits gamma and tau domain III 686 806 IPR022754 GO:0003887
Gma07g02617 1240 PANTHER PROTEIN STICHEL-LIKE 1 183 1179 - -
Gma07g02617 1240 SUPERFAMILY post-AAA+ oligomerization domain-like 703 804 IPR008921 GO:0003677|GO:0006260
Gma07g02617 1240 MobiDBLite consensus disorder prediction 198 231 - -
Gma07g02617 1240 MobiDBLite consensus disorder prediction 86 121 - -
Gma07g02617 1240 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 457 806 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gma07g02617 1240 Gene3D - 448 630 IPR027417 -
Gma07g02617 1240 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 183 1179 - -
Gma07g02617 1240 MobiDBLite consensus disorder prediction 388 409 - -
Gma07g02617 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 679 IPR027417 -
Gma07g02617 1240 MobiDBLite consensus disorder prediction 104 119 - -
Gma07g02617 1240 CDD HLD_clamp_pol_III_gamma_tau 632 695 IPR045085 -
Gma07g02617 1240 Gene3D - 634 695 - -
Gma07g02617 1240 MobiDBLite consensus disorder prediction 25 45 - -
Gma07g02617 1240 MobiDBLite consensus disorder prediction 390 407 - -
Gma07g02617 1240 MobiDBLite consensus disorder prediction 809 894 - -
Gma07g02617 1240 MobiDBLite consensus disorder prediction 29 45 - -
Gma07g02617 1240 MobiDBLite consensus disorder prediction 1019 1039 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02617 Gma-Chr7 48312455 48319411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02617 453 747 Core DNA Replication Machinery Family AT1G21690 24.013 5.34e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g02617 - - gmx:100814391 2327.36