Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02560 ATGCATCGCCCCGATCGTGCAACTAATTTTCATATTTATTTTCTTCCCTTCTTCCTCCAATCGATAAGTTTGTTTAGTGTAATTGCCCTGAACCAAAACCCAAACAGTTTCTCACACAGCGGAGGTTTAAGCGTAAATTCGACGAGAATGCGTAAGGACGAAGCCAAGGCCCCCGGCGCCATGCCGCAGCAGCAGCGATCGCACATCCAGTTCTTCGTGCGAATGATGTCTGCCGGAAACACGATTGTGATGCAAGCCTTCCCCGAAGACACGGTCAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCATTGTTCGAGCAGAGGTTAATTTATCGCGGGAAACAGCTCCAGTGGGAACAGACTCTTGCCGAGTGTTTCATTCAAAACGACGCCAACCTTCAATTAGTTGGCCGTATGCGCAGTACCGAACACCCTCAAGCCTGGCAAGTTATCAACGACATGGTTTCTCTCGTTTACCGTCTTTGCCGCGGCGAGACGGTTCACGATGCCTTGAAAACCGTCAAGGGTTTGATGACCAGTTACTTGAACATGACTCCCAGAATTGACAACGACTCTGCCTCTGGCTACTTTCAGATTTTCATGTCTTCTTCTGCCCCCGCTGTGCTTGTTATGCTCTATGTGTCCCCTTACGCAGGTAACAAGGACTGTGCTGATTCCTCTGTTAGACACTTTTTGAGTTCCTGTCGCAATATTTTGTCCAAGGCATTGCACGGCCAGTGTGCGCGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGGTCTCACGACCCTTTGTATCTCTTTTGTCGTAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGAGTTTCCTATGGTTCCGGTTCGGATAATGTTAAGGGGCTGGTTTTGATTCAGGATATTTTCCCCTTTGTTTGTGAGCTTGCTAACAGCTTGTTGAGGGATCTGGACTTGAGTATTGTGTCCCCCTCGGCCGCAGGGCCTTTGTCAAACGATGTTGGGGATTTTTCTGCATTCTTACTGCCTTTGAGGACTGGAATTAAGGAGCAACAGGCTGTCAAGGATTCTATGGCTCAAGACAAACACCACAAGCTCGCAGAAGAGATTGAATATCTTCATGGTTTGTACGTTCAGTTGTTGAACAAAATTGATCAGTGCCTTCAAAAAATGGACCAGAGTTTGGCTGGCCAGGAAATGATGGAGGGGGATAATCTTTATCCTGCCTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCAAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGGGTGTTTTGACGCGGCAAAGAAGTGTGCTATGTCTGCTGATAGTTCGATATGCGAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTATGTAACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTAAAAGAGGACTATGAGGAGTTACATGAGATGCTTATTGACAGGTCTCAGTTATTGACTGAGTCTTTTGAATACATCGCACGTGCTGAGCCTGACTCCCTGCATGCTGGCCTGTTTATGGAATTCAAAAACGAGGAAGCTACTGGCCCAGGTGTATTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCTCTTTTCGTAGCTTGCCCAAATGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAAGGTGCAAGTTGGTATTGCTTTTGATCGTGCGTTTTTCTTGCAATTGGCGGGAAACTATATTGCTATAAAAGATATAAGGGATGCAGATCCTTATCTGTATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTGATTGATTCAGATGCATTAGGACTGACATTTGTTAGGGAGGTGGAGGAATTAGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAATCTTGCAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGGATCACTTCGTAACATCCATATCTGAGCAGGTATCACATTTTGCGAAAGGTTTTGCAGATATTCTCTCAAACTCAAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGACCTTGATACGATGTTGCATGGGAGTGTTGCCATGTTTTCGTTGTAG 2241 0.4494 MHRPDRATNFHIYFLPFFLQSISLFSVIALNQNPNSFSHSGGLSVNSTRMRKDEAKAPGAMPQQQRSHIQFFVRMMSAGNTIVMQAFPEDTVKSIHERIQSMKGIPLFEQRLIYRGKQLQWEQTLAECFIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETVHDALKTVKGLMTSYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRNILSKALHGQCARVVLEFCKLLRRVGSHDPLYLFCRSTFGSLLETAGVSYGSGSDNVKGLVLIQDIFPFVCELANSLLRDLDLSIVSPSAAGPLSNDVGDFSAFLLPLRTGIKEQQAVKDSMAQDKHHKLAEEIEYLHGLYVQLLNKIDQCLQKMDQSLAGQEMMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWGVLTRQRSVLCLLIVRYAKRTDEHQWILEHRYVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPDSLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHKVQVGIAFDRAFFLQLAGNYIAIKDIRDADPYLYTSCKQILDMDADLIDSDALGLTFVREVEELGQRKVVELCPGGKNLAVNSKNRDKYVDLLIQDHFVTSISEQVSHFAKGFADILSNSKLQQYFFQSLDLEDLDTMLHGSVAMFSL 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02560 746 PRINTS Ubiquitin signature 80 100 IPR019956 -
Gma07g02560 746 PRINTS Ubiquitin signature 101 121 IPR019956 -
Gma07g02560 746 PRINTS Ubiquitin signature 122 143 IPR019956 -
Gma07g02560 746 ProSiteProfiles Ubiquitin domain profile. 69 145 IPR000626 GO:0005515
Gma07g02560 746 ProSiteProfiles HECT domain profile. 517 746 IPR000569 GO:0004842
Gma07g02560 746 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 53 742 - -
Gma07g02560 746 SUPERFAMILY Ubiquitin-like 69 157 IPR029071 -
Gma07g02560 746 Pfam Ubiquitin family 72 143 IPR000626 GO:0005515
Gma07g02560 746 Gene3D Hect, E3 ligase catalytic domains 497 722 - -
Gma07g02560 746 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 53 742 - -
Gma07g02560 746 SMART ubq_7 69 141 IPR000626 GO:0005515
Gma07g02560 746 Gene3D - 62 161 - -
Gma07g02560 746 SUPERFAMILY Hect, E3 ligase catalytic domain 492 739 IPR035983 GO:0004842
Gma07g02560 746 Gene3D Hect, E3 ligase catalytic domain 617 699 - -
Gma07g02560 746 SMART hect_3 515 745 IPR000569 GO:0004842
Gma07g02560 746 Pfam HECT-domain (ubiquitin-transferase) 546 740 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02560 Gma-Chr7 47867472 47871704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02560 69 143 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.333 6.33e-12 61.6