Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02540 ATGGAGGGTGTAATTTCTTCTAAAGGGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGTTGGTCATCATCCATTAAATCATCCTATTCTTAATAATCCCAATCCTAATGAACACACAAACACTCTCTTCCTTCCCATGCCTTGTACTAATAATAATCACCACCCGAACCGCAATAACCACAACTCCAACGCCACTGAGTTAGGGTATTTCATGGAGATCCCCAACAACAACAACGATGGAAGCTCCTCTTCCCCTTCTTCAGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCTCCGCCTGAAGTGGTGGGAAGGTTAGAAGAAGCATGTGCATCTGCTGCAGTGATAATGGCAGGTGGAACAGCCAGCATAGGCGAGGATCCAGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCCATGCTCTTTCTTCAGAGGATCGAGTGCCAGTTCAAATCTCTCACTATTTCTTCTTCTTTGGACACTACTGCGTGTAATGAAGCTATTGATAGGAATGGGCCATCTGAAGATGTTGATGTTCAGACCAACATAATAGATCCGCAGGCAGAGGACCAAGAACTGAAAGGTCAACTCTTACGCAAGTACCGTGGATACCTAGGCAGTTTGAAACAGGAATTCACCAAGAAGAGAAAAAAGGGCAAGCTGCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCTCTTGCAGAGTCAACAGGCCTGGATCAGAAGCAAATTAACAACTGGTTTATCAATCAAAGGAAGAGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTGGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTGGGCAATCCCTTTCCCATGGATCTCTCCCACCCAATGCTCTAA 1074 0.4609 MEGVISSKGMGFGENTSSSGVCPMMMMPLVTSHHVGHHPLNHPILNNPNPNEHTNTLFLPMPCTNNNHHPNRNNHNSNATELGYFMEIPNNNNDGSSSSPSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVGRLEEACASAAVIMAGGTASIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISSSLDTTACNEAIDRNGPSEDVDVQTNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLGNPFPMDLSHPML 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02540 357 ProSiteProfiles 'Homeobox' domain profile. 259 322 IPR001356 GO:0003677
Gma07g02540 357 SMART KNOX2_2 151 202 IPR005541 GO:0003677|GO:0005634
Gma07g02540 357 PANTHER - 3 346 - -
Gma07g02540 357 CDD homeodomain 271 323 IPR001356 GO:0003677
Gma07g02540 357 Pfam KNOX1 domain 103 142 IPR005540 GO:0003677|GO:0005634
Gma07g02540 357 SMART ELK_2 239 260 IPR005539 GO:0003677
Gma07g02540 357 Gene3D - 264 326 - -
Gma07g02540 357 SUPERFAMILY Homeodomain-like 261 337 IPR009057 -
Gma07g02540 357 SMART HOX_1 261 326 IPR001356 GO:0003677
Gma07g02540 357 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 346 - -
Gma07g02540 357 ProSitePatterns 'Homeobox' domain signature. 297 320 IPR017970 GO:0000981|GO:0006355
Gma07g02540 357 ProSiteProfiles ELK domain profile. 239 259 IPR005539 GO:0003677
Gma07g02540 357 SMART KNOX1_2 102 146 IPR005540 GO:0003677|GO:0005634
Gma07g02540 357 Pfam ELK domain 239 259 IPR005539 GO:0003677
Gma07g02540 357 Pfam Homeobox KN domain 279 318 IPR008422 GO:0003677|GO:0006355
Gma07g02540 357 Pfam KNOX2 domain 154 201 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02540 Gma-Chr7 47695125 47699791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02540 104 357 Homeobox Transcription Factor Family AT1G62360 79.389 3.30e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma07g02540 KNOX2 4.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g02540 - - gmx:100127401 701.049