Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02499 ATGATGCAGGCTGGACCCGGCGGCATGGCCCAACAAGCGAACCAACAATACGCACAGCAACAGCAACAACCCTACATGATGATGCCGCCGCAGCCTCAGCCCCCTCAGATGTGGGCCACATCGGCCCAGCCTCCGTCCCAGTCGGTGGCTCCTCCGCAACCCACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGTGATTTGCAGTACTGGATGGACGAAAATTATCTCTACACCTGTTTGGCACACACCGGCGAGGTGGCTTCAGTTAAAGTCATTCGGAACAAACAAACTAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACTAGTCGTGCTGGTGCTGAGAGAGTCCTTCAAACATACAATGGCACCATTATGCCAAATGGCGGGCAGAACTTCAGATTGAACTGGGCAACTCTTAGTGCAGGTGAGAGGCGTCACGATGATAGCCCAGATCACACCATATTTGTTGGAGACCTGGCTGCCGATGTTACGGATTATCTTCTTCAAGAGACATTTCGGGCACGATATCCCTCAATTAAGGGGGCCAAAGTTGTAATTGATAGGCTAACTGGACGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGAGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGCGAATTGGACCAGCCTCTAATAAAAACCCTAGCACTCAGTCTCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAACGTCACGGATGACCATTTGAGACAAGTTTTTGGGCATTATGGAGAGTTAGTTCATGTGAAGATTCCAGCTGGCAAGCGATGTGGATTTGTCCAATTTGCGGACCGGAGCTGTGCGGAAGAGGCACTGCGGGTTTTGAATGGCACACTTCTAGGCGGACAAAATGTTAGGCTTTCATGGGGGCGAAGTCCTTCAAACAAACAGGCTCAACCAGATGCAAACCAGTGGAATGGTAGTGGTGGTGGATACTACGGATATGCTCAGGGGGGCTATGAAAATTATGGTTATGCCCCTGCTGGACAGGACCCCAATATGTATGGCAGTTATCCTGGGTATGCGAATTACCAACCTCCCCAGCAACAGCAGCAAATAGGATATAGCTAA 1194 0.4925 MMQAGPGGMAQQANQQYAQQQQQPYMMMPPQPQPPQMWATSAQPPSQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCLAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTYNGTIMPNGGQNFRLNWATLSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSIKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGHYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSGGGYYGYAQGGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02499 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 233 IPR000504 GO:0003723
Gma07g02499 397 SMART rrm1_1 155 229 IPR000504 GO:0003723
Gma07g02499 397 SMART rrm1_1 62 137 IPR000504 GO:0003723
Gma07g02499 397 SMART rrm1_1 262 329 IPR000504 GO:0003723
Gma07g02499 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 219 IPR000504 GO:0003723
Gma07g02499 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 326 IPR000504 GO:0003723
Gma07g02499 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 128 IPR000504 GO:0003723
Gma07g02499 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 394 - -
Gma07g02499 397 CDD RRM3_NGR1_NAM8_like 260 331 - -
Gma07g02499 397 MobiDBLite consensus disorder prediction 383 397 - -
Gma07g02499 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 141 IPR000504 GO:0003723
Gma07g02499 397 Gene3D - 240 367 IPR012677 -
Gma07g02499 397 MobiDBLite consensus disorder prediction 377 397 - -
Gma07g02499 397 Gene3D - 145 239 IPR012677 -
Gma07g02499 397 MobiDBLite consensus disorder prediction 228 260 - -
Gma07g02499 397 MobiDBLite consensus disorder prediction 225 260 - -
Gma07g02499 397 CDD RRM1_SECp43_like 62 140 - -
Gma07g02499 397 MobiDBLite consensus disorder prediction 1 56 - -
Gma07g02499 397 CDD RRM2_SECp43_like 153 232 - -
Gma07g02499 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 333 IPR000504 GO:0003723
Gma07g02499 397 MobiDBLite consensus disorder prediction 8 26 - -
Gma07g02499 397 Gene3D - 7 144 IPR012677 -
Gma07g02499 397 SUPERFAMILY RNA-binding domain, RBD 245 364 IPR035979 GO:0003676
Gma07g02499 397 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 16 394 - -
Gma07g02499 397 SUPERFAMILY RNA-binding domain, RBD 60 236 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02499 Gma-Chr7 47408078 47412020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02499 260 339 Eukaryotic Initiation Factors Gene Family AT4G34110 34.483 2.13e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g02499 - - gmx:100814743 728.013