Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02427 ATGGAGCAGAGTTGGCGGGCCAATATGCCTCGCGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGGCCACGTGGCCGTCGCGGAGGAGCGTGGTGGCTTGTGGCGGAGTGTGTCGCACCTGGAGGCTCATTGTCAAGGAGATTGTCAAGCCACCTCAACTCTCTTCCAACATAACCTTCCCCATCTCTCTCAAACAGCCTGGCCCGAGGGAACATCTACTTCAGTGCTTCATTAGGCGCAACAGTGCCACACAGACATATTATCTGTTTCTCAGTTTATCTACACTAATAGCTGATGATGGGAAGTTCCTTCTTGCTGCACGCAAGTTCAGACGCCCTACCTGCATAGATTATATTATCTCCCTAGATGCAGATGATATGTCCAGAGAAAGCAATGCCTATGTTGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTTACAATCTACGATATCCCGCTGCCTCATGTTGGGGCAAAGATGACAAAAAGTTGCTTCACTAAGCTGGTGAATCCAAAACAAGTTTCACCTAGGGTCCCTACAGGCAACTATCCAGTTGCTCACATCTCATATGAACTGAATGTACTAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTCATGGATACCATTCCTGCTTCTGCtattgaaccgggaggggtagccgtagccccttcacagactgatttttctgttagTAACATAGATACTTCATTCCCATTTTTTCAGACAAACTCAACTAGTCTGGAAAACTCCATATCTGGAGACCAGAGAAATAAAAAAGATGATGTGCTAGTGTTGAGAAACAAGGCTGCCAGGTGGCATGAGCAGCTGGAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACAATTGCTTCGGTTAAAAACTTTCAGCTGGCTGTTTCACCAGAAAATGGACATGCTGGACCACAAGAGGATGAGCATTTCAAGCATTTGCAATCTGCCTCAGCAGTTTCGCTACCACAGTTGCTTGCGAATGATACATGTTTGAAGCATCTTTGGACAGCGTGGCCTTTAGCTGTATGGTGTGATGTGATGATGACTTGGTGGGAAGAATCTGACGAAAACCGTTTCCAAAGGGAATATCAGACGAAAGTGGAAACTGCAACAAGGCTTGCAATTGATAAAGATAACCGACTAGAAGTTGAATAA 1182 0.4408 MEQSWRANMPRELLREVLLRIESSEATWPSRRSVVACGGVCRTWRLIVKEIVKPPQLSSNITFPISLKQPGPREHLLQCFIRRNSATQTYYLFLSLSTLIADDGKFLLAARKFRRPTCIDYIISLDADDMSRESNAYVGKLRSNFLGTKFTIYDIPLPHVGAKMTKSCFTKLVNPKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMHCVMDTIPASAIEPGGVAVAPSQTDFSVSNIDTSFPFFQTNSTSLENSISGDQRNKKDDVLVLRNKAARWHEQLECWCLNFHGRVTIASVKNFQLAVSPENGHAGPQEDEHFKHLQSASAVSLPQLLANDTCLKHLWTAWPLAVWCDVMMTWWEESDENRFQREYQTKVETATRLAIDKDNRLEVE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02427 393 ProSitePatterns Tub family signature 1. 288 301 IPR018066 -
Gma07g02427 393 Pfam Tub family 67 316 IPR000007 -
Gma07g02427 393 PANTHER TUBBY-RELATED 1 316 - -
Gma07g02427 393 Gene3D Tubby Protein; Chain A 66 340 IPR025659 -
Gma07g02427 393 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 316 - -
Gma07g02427 393 Pfam F-box domain 8 52 IPR001810 GO:0005515
Gma07g02427 393 PRINTS Tubby superfamily signature 121 137 IPR000007 -
Gma07g02427 393 PRINTS Tubby superfamily signature 137 161 IPR000007 -
Gma07g02427 393 PRINTS Tubby superfamily signature 270 287 IPR000007 -
Gma07g02427 393 PRINTS Tubby superfamily signature 288 304 IPR000007 -
Gma07g02427 393 PRINTS Tubby superfamily signature 186 213 IPR000007 -
Gma07g02427 393 SUPERFAMILY Tubby C-terminal domain-like 55 308 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02427 Gma-Chr7 46821220 46824523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02427 1 316 TUB Transcription Factor Family AT2G47900 64.174 2.23e-145 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma07g02427 Tub 2.2e-78 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g02427 K19600 - gmx:100794141 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g02427 07 46821220 46824523 Gma07g02427 07 46821220 46824523 ECH