Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02345 ATGTCGCTCAGGCCAAATGCCAGAACCGAGGTTCGCCGCAACCGTTACAAGGTCGCCGTTGACGCCGACGAGGGCCGCCGGAGAAGAGAGGACAACATGGTCGAGATCCGCAAGAGCAAGCGCGAAGAGAGTTTGCTCAAGAAGCGTCGCGAAGGCCTCCAAGCTCACCAACAGCTTCCCGCTCCTCTTCAGAACTCCACTGTCGACAAAAATTTAGAGAGTCTTCCTGCAATGGTTGCTGGAGTTTGGTCGAATGATAATAGTCTTCAACTTGAAGCCACCACGCAATTTCGCAAGCTGCTTTCGATTGAACGGAGCCCTCCGATTGAGGAAGTTATTCAAGCTGGTGTTGTTCCACGTTTTGTTGAGTTTCTTGTTAGAGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACAAACATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTAATTGATCACGGGGCAGTTCCTATATTTGTCAAGCTACTCAGTTCACCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTGGTGCTCAGCCATGGTGCTCTCGTCCCACTGTTGGCCCAGTTGAATGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACATTATCTAACTTTTGCAGGGGTAAGCCACAGCCTCCGTTTGAGCAGGTGAGACCAGCACTTCCTGCACTCGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCATTATCATATCTCTCTGATGGCACAAATGACAAAATCCAAGCAGTTATTGAAGCAGGTGTATGTCCCAGATTGATGCAGCTTCTCATGCACCCATCTCCCTCGGTGCTGATTCCTGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGACATGCAGACTCAGTGTATTATCAATCATGGTGCACTTCCTTGCCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACCATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGACTGTTATTGAAGCTGGTCTGGTTGCACCCCTTGTCAATCTTCTTCAAAGTGCCGAGTTTGACATTAAAAAAGAAGCTTCTTGGGCAATCTCAAATGCTACATCTGGTGGAACTCATGACCAGATCAAgtatttggaAATGGTGCTCAACCTGGTTTCAATTTCGGAAACAATGAGCTTCCCGTCCCATCTGGTGGATTCAACTTCAGCTGAAGACCTTTTCCTGAGAAGGGACTTGTTGGACGAAGTAGGGGTTTGTGCCGGGTGGGCGTGTGTGTTGGGATAA 1377 0.472 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAHQQLPAPLQNSTVDKNLESLPAMVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLMQLLMHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQSAEFDIKKEASWAISNATSGGTHDQIKYLEMVLNLVSISETMSFPSHLVDSTSAEDLFLRRDLLDEVGVCAGWACVLG 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02345 458 SMART arm_5 189 231 IPR000225 GO:0005515
Gma07g02345 458 SMART arm_5 274 314 IPR000225 GO:0005515
Gma07g02345 458 SMART arm_5 148 188 IPR000225 GO:0005515
Gma07g02345 458 SMART arm_5 233 272 IPR000225 GO:0005515
Gma07g02345 458 SMART arm_5 359 399 IPR000225 GO:0005515
Gma07g02345 458 SMART arm_5 316 357 IPR000225 GO:0005515
Gma07g02345 458 SMART arm_5 105 146 IPR000225 GO:0005515
Gma07g02345 458 PANTHER IMPORTIN SUBUNIT ALPHA 2 410 - -
Gma07g02345 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Gma07g02345 458 Gene3D - 11 50 IPR036975 GO:0006606
Gma07g02345 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Gma07g02345 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Gma07g02345 458 SUPERFAMILY ARM repeat 6 409 IPR016024 -
Gma07g02345 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Gma07g02345 458 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Gma07g02345 458 PIRSF Importin_alpha 2 418 IPR024931 GO:0005737|GO:0006606|GO:0061608
Gma07g02345 458 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Gma07g02345 458 PANTHER IMPORTIN ALPHA 2 410 - -
Gma07g02345 458 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Gma07g02345 458 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Gma07g02345 458 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Gma07g02345 458 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Gma07g02345 458 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Gma07g02345 458 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Gma07g02345 458 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Gma07g02345 458 Gene3D - 73 426 IPR011989 -
Gma07g02345 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02345 Gma-Chr7 46157096 46161264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02345 131 436 U-box Gene Family AT3G46510 24.204 9.90e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g02345 K15042 - gmx:100792804 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g02345 07 46157096 46161264 Gma07g02345 07 46157096 46161264 ECH
Gma07g02345 07 46157096 46161264 Gma19g02179 19 50627414 50633346 ECH
Gma07g02345 07 46157096 46161264 Gma03g02147 03 46928886 46934168 ECH
Gma07g02345 07 46157096 46161264 Gma10g01472 10 41818670 41824474 ECH
Gma07g02345 07 46157096 46161264 Gma20g02228 20 49397462 49401869 ECH