Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma07g02299 | ATGGCATCTGATCCTGAATCGCCAACCTCTCCTTCCGTTGGTTTCAACACCGACCAGCTTCCTCACACCCACACCAGCCGTGCCTCCGAAGACGACGAGGCTTCCGTCGATCCCGATATCGTACGAGACGAAATCGAAGAACAACCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGATGATTATAAGAGAATGGATGAAGCTGACCAGTTCGAATCGTTTGGGCTGGACGACTCGTTGGAAGATGACAGGGATTTTGATCAGATCATGCAGGATCGAAGGGCCGCGGAGATTGAACTCGAGGCACGCGATGGTCGCGCTTCCAATCGTAACAAGCTTCCGCAGCTTCtccacgaccaggATACAGATGATGACAATCACAGGTCTTCTAAAAGGGCTCGAGCTGATTTTAGGCCTTCTGCAGCAAGTGATGATGACCTTGATGGTATGCAAAGTTCGCCTGGAAGGTCACAACGAGGGCACCCGAGAGAGGATGTTCTCATGACTGATCAAACTGAGGATGATCGAGATGATGATGATTTTGATGATGGATATGAGATGTATCATGTTCAAGGAACACTTAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGACTTTTTACTCACGTATGTTAATCCAAAAAATGAACATAGGGACAAGGAATACGTGTGGCTGATAAATGAGATGGTGTCAGCTAGTAAGTGCAGTTTGGAGATAGATTATAAACAATTTATCTATGTTCATCCCAACATTGCCATTTGGCTAGCTGATGCCCCTCAATCTGTCTTAGAAGTAATGGAAGATGTTACCAAAAGCGTTGTCTTTGAATTACATCCAAATTACAGGAATATACACCAAAAAATTTATGTTCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAATGTGGAGCAATTTTGGGGCCTTTTTTTCAGAATTCCTATTCAGAGGTGAAAGTGGGATCCTGTCCTGAGTGTCAATCAAAAGGACCATTCACTGTGAATATTGAACAGACAATTTATAGGAATTTTCAGAAGCTTACCCTCCAAGAGAGTCCAGGAATAGTCCCTGCGGGTCGACTTCCAAGATACAAGGAAGTGATACTATTGAATGATCTGATTGATTGTGCTCGTCCTGGAGAAGAAATTGAGGTCACAGGTGTTTATACCAATAATTTTGACTTATCCCTTAACACAAAAAATGGGTTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACGAAAAAGCAAGACCTATTTTCTGCCTACAAACTTACACAGGAAGACATAGAAGAGATTGAAAATTTGGCTAAAGACCCTCGAATTGGAGAAAGGATTGTTAAGTCTATTGCTCCATCAATCTATGGTCACGATGACATAAAAACTGCAATAGCTTTAGCTATATTTGGAGGTCAAGAAAAAAATGTGGAAGGAAAGCATCGCCTGAGGGGAGACATAAATGTTCTTCTTCTCGGTGATCCAGGGACAGCGAAGTCTCAGTTTCTCAAGTATGTTGAAAAAACTGGACAGAGAGCTGTATACACTACTGGTAAAGGGGCTTCTGCCGTGGGTCTTACTGCCGCGGTTCATAAGGATCCAGTCACAAGGGAGTGGACTCTTGAAGGGGGGGCGCTTGTTCTAGCTGACAGAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGACCAGGATAGGGTGAGCATCCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAGATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAGGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAATCAAGATGATAAGTCCTTTAGTGAGTCCCAAGATGTCCATGCATCTGCCATGCCAGCTGATCCAGAGATACTTCCTCAACAGCTACTGAAGAAGTACATTACATATGCCAAGTTAAATATTTTTCCAAGGTTACAAGATGCTGATATGGATAAACTGTCACATGTCTATGCCGAACTACGGAGGGAATCTTCACACGGACAAGGAGTCCCTATTGCTGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTCAGGCAACATGTTACACAAGAGGATGTGGACATGGCAATTCGTGTTCTTCTTGAATCATTCATTTCAACTCAAAAATTTGGGGTGCAGAAGGCTCTTCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGACTACAATGAACTGCTCCTTTATATTCTTCGCGAGCTTGTAAAGAATGCTTTGCATTTTGAAGAAATTGTCACCGGATCTGCTTCTGGTTTAACGCACATAGATGTCAAAGTAGATGATCTCTACAACAAGGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCACTTTTCAAGGGCCAATTTTGTATTGGATGAAGAACGGAGAGTGATCAGACATCACCTTACCAGATGA | 2790 | 0.4233 | MASDPESPTSPSVGFNTDQLPHTHTSRASEDDEASVDPDIVRDEIEEQPEEEEDGEDLYNDNFLDDYKRMDEADQFESFGLDDSLEDDRDFDQIMQDRRAAEIELEARDGRASNRNKLPQLLHDQDTDDDNHRSSKRARADFRPSAASDDDLDGMQSSPGRSQRGHPREDVLMTDQTEDDRDDDDFDDGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHRDKEYVWLINEMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKSVVFELHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDIEEIENLAKDPRIGERIVKSIAPSIYGHDDIKTAIALAIFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLATFVVDSHFKSQPKGANQDDKSFSESQDVHASAMPADPEILPQQLLKKYITYAKLNIFPRLQDADMDKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYILRELVKNALHFEEIVTGSASGLTHIDVKVDDLYNKAQEHDIYDLKPFFNSSHFSRANFVLDEERRVIRHHLTR | 929 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma07g02299 | 929 | MobiDBLite | consensus disorder prediction | 102 | 188 | - | - | |
| Gma07g02299 | 929 | Pfam | Mini-chromosome maintenance protein 2 | 31 | 170 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma07g02299 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 534 | 549 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma07g02299 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 594 | 608 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma07g02299 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 622 | 635 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma07g02299 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 646 | 658 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma07g02299 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 673 | 681 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma07g02299 | 929 | SMART | mcm | 310 | 824 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma07g02299 | 929 | MobiDBLite | consensus disorder prediction | 121 | 148 | - | - | |
| Gma07g02299 | 929 | Pfam | MCM AAA-lid domain | 740 | 823 | IPR041562 | - | |
| Gma07g02299 | 929 | MobiDBLite | consensus disorder prediction | 706 | 728 | - | - | |
| Gma07g02299 | 929 | Pfam | MCM N-terminal domain | 214 | 307 | IPR027925 | - | |
| Gma07g02299 | 929 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Gma07g02299 | 929 | Pfam | MCM P-loop domain | 480 | 703 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma07g02299 | 929 | Gene3D | - | 314 | 439 | IPR012340 | - | |
| Gma07g02299 | 929 | PANTHER | DNA HELICASE | 133 | 918 | - | - | |
| Gma07g02299 | 929 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
| Gma07g02299 | 929 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 133 | 918 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma07g02299 | 929 | Gene3D | - | 473 | 846 | IPR027417 | - | |
| Gma07g02299 | 929 | ProSitePatterns | MCM family signature. | 602 | 610 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Gma07g02299 | 929 | MobiDBLite | consensus disorder prediction | 36 | 60 | - | - | |
| Gma07g02299 | 929 | CDD | MCM2 | 496 | 822 | - | - | |
| Gma07g02299 | 929 | Gene3D | - | 206 | 310 | - | - | |
| Gma07g02299 | 929 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 503 | 826 | IPR027417 | - | |
| Gma07g02299 | 929 | Pfam | MCM OB domain | 313 | 440 | IPR033762 | - | |
| Gma07g02299 | 929 | Gene3D | - | 341 | 391 | - | - | |
| Gma07g02299 | 929 | ProSiteProfiles | MCM family domain profile. | 493 | 699 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma07g02299 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 323 | 340 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma07g02299 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 346 | 358 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma07g02299 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 381 | 395 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma07g02299 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 442 | 453 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma07g02299 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 457 | 468 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma07g02299 | 929 | SUPERFAMILY | Nucleic acid-binding proteins | 215 | 462 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma07g02299 | Gma-Chr7 | 45854058 | 45859212 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma07g02299 | 14 | 924 | Core DNA Replication Machinery Family | AT1G44900 | 75.490 | 0.0 | 1367 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma07g02299 | K02540 | - | gmx:100799441 | 1809.65 |