Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02216 atgggtagggtaaagctaaagataaagaggttggagaacaCCAATGGTCGCCAAGCAACATATGCTAAAAGGAAAAATGGGATTATGAAAAAAGCTGCTGAAATATCTATACTTTGTGATATAGATATTATACTTCTTATGTTTGCACCAAATGGAAAGCCTTCATTATGTAGGGGGAGGCACAGTAACTTTGAGGAGGTTATTGCGAAGTTTGGTCAACTAACTCCTCAAGAAAGGGCAAAAAGGAAGTTAGAAACTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGATCATGATGTAAATGTACAAGAATTTATGGGTACAAGGTATGTCACTGATTTGAGTAATCAAGCCAGGCTATTACAAACTCAAATTTCTGAAACTCATAAGAGATTAAGTCATTGGACTGAGTTTGATAAAATAAGCAATGTGGATCAACTAGGACAAATGGAAAATTCACTTAGAGAGTCACTTAATCAAATTCGAACCCGTAAGGAAAATATAAAAAAACAGCAACAACTTATGTCGCTACAATGCAATAATCAGTTCAACGAAATGAATATTCCTTTTAGAATGAGTGTAGAGCAACAACTGCAACCTTTGTCATGGATTGCCAATGATGATAACCACAATATAGTTTTACCCGAGGACTCAAACATGTTTCTCCACAAAGATGTAGAGGGATCTACAAGTTCATCTTTTGGGAGTCATGTCAGTTATCTTGGCTCAAGTATCAAGAATGACATGTCAAACTCAGCACAAGAAAATGGAGTCCTTAGTGATATGAGCAATACTGCCCCAATGAGGCTACAATTAAATGGGCATTTTCCATACCTACCTTACAATTTTAATTTACCGAACAATTTGAAGTTTCAACCAACTGCAGAGATCAACCCTTATGAAAATCCTGTAGATTATCATGTTAATGGAGGCTTTGAAGCACCTAGATCTGGTTATGACTCTAACAATCACCATGATTGGGCTTCCACATCAGGGCCTTGTGGTGTTACTATGTTTGATGAGCAATTATATGCCCAGGCAAGCTCCACTAAAATGAACTTTGGTTTTATATAG 1077 0.351 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAEISILCDIDIILLMFAPNGKPSLCRGRHSNFEEVIAKFGQLTPQERAKRKLETLEALKKTFKKLDHDVNVQEFMGTRYVTDLSNQARLLQTQISETHKRLSHWTEFDKISNVDQLGQMENSLRESLNQIRTRKENIKKQQQLMSLQCNNQFNEMNIPFRMSVEQQLQPLSWIANDDNHNIVLPEDSNMFLHKDVEGSTSSSFGSHVSYLGSSIKNDMSNSAQENGVLSDMSNTAPMRLQLNGHFPYLPYNFNLPNNLKFQPTAEINPYENPVDYHVNGGFEAPRSGYDSNNHHDWASTSGPCGVTMFDEQLYAQASSTKMNFGFI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02216 358 CDD MADS 2 54 - -
Gma07g02216 358 Coils Coil 77 97 - -
Gma07g02216 358 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Gma07g02216 358 Coils Coil 152 172 - -
Gma07g02216 358 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Gma07g02216 358 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma07g02216 358 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 349 - -
Gma07g02216 358 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma07g02216 358 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma07g02216 358 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma07g02216 358 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Gma07g02216 358 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 349 - -
Gma07g02216 358 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02216 Gma-Chr7 44722619 44727412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02216 1 347 Type I MADS-box Gene Family AT2G03060 48.413 2.69e-103 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma07g02216 SRF-TF 7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g02216 - - gmx:100811701 687.567