Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02171 ATGTTGGGTGGTCTATACGGAGACCTTCCTCCACCTTCTTCCGCCGAGGAAGACAACAAGCCCACCCCCAACGTCTGGTCCTCCAGCACCAAGATGGCTCCCGCCACGCTCCGCAAGCCCGCCTCCCTCTTCGCGCCCCCCCAAACCCTCCTACGGGCCCACCCCAAGCCCAAGCCCACCGCCAAGCCCGTCCTCTCCTCCACCACCCCCGCCCTTCCCCCGGAAGACTCCCCCCTCCAGCCCgCCCTCGTTGGCGTCCAGTCCACCGTCCTCGAGGAGTACGACCCGGCCCGGCCCAACGACTACGAGGAATACCGCCGCGACCTCAAGCGCAAAGCCCGCGAGGCCGAGATGCTGCGCGAGCTCGAGCGCCGCCGCCAGGAGGAGGAAGAGGAAGAGAAGGAAAGGGAAAAGGAAAGAGAAAAAGAGAGAGAAAGAGACTACAACAACAACAACGATTCTTCGTCGTCGAGGCTGAATGTTTCCGGCGAAGAGGCGTGGAGGAGGCGCGCGGCGATGAGCGGGGCGGCGGCGGGGGCGCCGCCGAGATCGCCGTCGCCGCCGCTGCCGGGGAATTCGGACGGGTTTAGCATCGGGAAGTCGGAGACCGGGGGATTGGGCGTCGGGGCTGGCGGGCAGATGACAGCGGCACAGCGGATGATGGCGAAGATGGGGTGGAAGGAGGGGCAGGGGCTGGGGAAGCAGGAACAGGGGATCACCACGCCTTTGATGGCGAAGAAAACAGATAGACGAGCCGGGGTTATTGTGAATGCCAGTGACAATAATAGCAGCAGCAAGAAAGTGAAGAGTGTTAACTTCAATGGTGTGCCTACCAGGGTGCTGCTGCTCAGGAACATGGTGGGTCCTGGTGAGGTAGACGACGAGCTTGAAGATGAGGTAGGATCAGAATGTGCCAAATATGGAATTGTAACCCGCGTTCTGATATTTGAGATAACAGAGCCAAATTTCCCCGTTCATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACAACTAAAGCACTTGTTGACCTTGATGGTCGGTACTTTGGGGGTAGAGTGGTGCGTGCCACATTTTATGATGAGGAGAAATTTAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGCTTCACCTGA 1155 0.5853 MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRAHPKPKPTAKPVLSSTTPALPPEDSPLQPALVGVQSTVLEEYDPARPNDYEEYRRDLKRKAREAEMLRELERRRQEEEEEEKEREKEREKERERDYNNNNDSSSSRLNVSGEEAWRRRAAMSGAAAGAPPRSPSPPLPGNSDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNNSSSKKVKSVNFNGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGIVTRVLIFEITEPNFPVHEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEEKFSKNELAPMPGEIPGFT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02171 384 SUPERFAMILY RNA-binding domain, RBD 281 368 IPR035979 GO:0003676
Gma07g02171 384 Pfam G-patch domain 216 255 IPR000467 GO:0003676
Gma07g02171 384 Gene3D - 275 373 IPR012677 -
Gma07g02171 384 ProSiteProfiles G-patch domain profile. 213 259 IPR000467 GO:0003676
Gma07g02171 384 PIRSF SPF45 3 380 IPR040052 GO:0045292
Gma07g02171 384 SMART rrm2_1 280 361 IPR003954 GO:0003676
Gma07g02171 384 MobiDBLite consensus disorder prediction 18 35 - -
Gma07g02171 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 365 IPR000504 GO:0003723
Gma07g02171 384 Coils Coil 102 151 - -
Gma07g02171 384 SMART G-patch_5 211 257 IPR000467 GO:0003676
Gma07g02171 384 MobiDBLite consensus disorder prediction 1 82 - -
Gma07g02171 384 CDD RRM_UHM_SPF45 277 373 IPR034653 -
Gma07g02171 384 PANTHER SPLICING FACTOR 45 SPF45 1 375 IPR040052 GO:0045292
Gma07g02171 384 MobiDBLite consensus disorder prediction 122 210 - -
Gma07g02171 384 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02171 Gma-Chr7 43999956 44005078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02171 219 254 C2H2 Transcription Factor Family AT5G26610 61.111 5.85e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g02171 K12840 - gmx:100805487 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g02171 07 43999956 44005078 Gma20g00223 20 2694889 2699482 GST