Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02078 ATGAAGAAGTGTGTGGCGTTTCTTGCCACAACCATTTGGAAAAGGTTCCACGTTTCTCCTCCTCAAACTCAATGTCGATTCTACTGTTCTCCCCCCTCTCATGCTTCCTCCAACAAGCTCTTTGTGGGAGGGTTGTCATGGTCAGTGGACCACAAGTCCCTCAAAGAGGCTTTCTCTTCCTTCGGGGACGTCACTGAAGTGACGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCTAAATGTGCAAAGGATGCAATGGATGGAAAGGCACTGTTGGGTAGACCATTGAGGATAAATTTTGCTCTTGAGAAGGCCCGTGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGACATGTGAATAGGCACTAA 414 0.4541 MKKCVAFLATTIWKRFHVSPPQTQCRFYCSPPSHASSNKLFVGGLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDIGHVNRH 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02078 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Gma07g02078 137 PANTHER TRANSFORMER-2-RELATED 22 134 - -
Gma07g02078 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Gma07g02078 137 SUPERFAMILY RNA-binding domain, RBD 22 120 IPR035979 GO:0003676
Gma07g02078 137 Gene3D - 19 120 IPR012677 -
Gma07g02078 137 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 22 134 - -
Gma07g02078 137 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02078 Gma-Chr7 42525474 42528915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02078 36 117 C2H2 Transcription Factor Family AT2G19380 36.905 7.33e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g02078 - - gmx:100810104 285.034