Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g02040 ATGGCTCAACCCAGTTCCAACGGGGATCTGAATAATAACCAGCAGGGTCAGGTTCAGCAACAGCAGCAGCAGTGGGCGGCGGCGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTACCCGGCCACAGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCCTACGCTCACCCCCATTATCCGCCGCCGCCGCCGCCGCCGCCTCCTCAGTCGTCTCACCATCACCACCACAAACAGGCCGCAGCCGCGGCGGCGGCTGCGGCCTCCTCCGACGAGATCAGGACCGTCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTGTGTCGGCCAAGGTCATTCGAAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTCGTGGAGTTCTATTCACGAGCGACGGCTGAGAAAGTCTTGCAGAACTATAATGGCACGATGATGCCCAATACAGATCAGGCATTCCGTCTGAATTGGGCCACATTCAGTGCGGGGGAAAGGCGTTCTTCCGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCTGGCCGATATTCATCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACCGGCCGCTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGAACGAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGGCCCATGCGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGCTACCAACAACAATATTCTTCTCAAGCTGTGCTATTGGCCGGTGGACACGCAGCTAATGGTGCTGTGGCCCAAGGTTCCCATTCTGAAGGGGATTTAAACAACACCACTATATTTGTTGGAGGGCTTGATTCTGACACCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGATTTGTTCAATTTGCAGACAGAAAGAATGCTGAGGAAGCAATTCACGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGACTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGATCTGATTCCAATGGAGGCTATTTTGGTGGTCAGAGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATATAGCCATGCAACCTGCAACTGCAATTCAAGGGGCTTCCTAA 1302 0.5046 MAQPSSNGDLNNNQQGQVQQQQQQWAAAQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYAHPHYPPPPPPPPPQSSHHHHHKQAAAAAAAAASSDEIRTVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSSDATSDLSIFVGDLAIDVTDAMLQETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVLLAGGHAANGAVAQGSHSEGDLNNTTIFVGGLDSDTSDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGYFGGQSYGGHGFAVRQNQDIAMQPATAIQGAS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g02040 433 CDD RRM1_SECp43_like 104 184 - -
Gma07g02040 433 SUPERFAMILY RNA-binding domain, RBD 307 412 IPR035979 GO:0003676
Gma07g02040 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Gma07g02040 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 381 IPR000504 GO:0003723
Gma07g02040 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 172 IPR000504 GO:0003723
Gma07g02040 433 Gene3D - 298 420 IPR012677 -
Gma07g02040 433 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 23 432 - -
Gma07g02040 433 SUPERFAMILY RNA-binding domain, RBD 195 289 IPR035979 GO:0003676
Gma07g02040 433 MobiDBLite consensus disorder prediction 1 23 - -
Gma07g02040 433 CDD RRM2_SECp43_like 196 275 - -
Gma07g02040 433 CDD RRM3_NGR1_NAM8_like 315 386 - -
Gma07g02040 433 SUPERFAMILY RNA-binding domain, RBD 68 184 IPR035979 GO:0003676
Gma07g02040 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Gma07g02040 433 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 432 - -
Gma07g02040 433 MobiDBLite consensus disorder prediction 68 95 - -
Gma07g02040 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 276 IPR000504 GO:0003723
Gma07g02040 433 Gene3D - 102 182 IPR012677 -
Gma07g02040 433 Gene3D - 184 290 IPR012677 -
Gma07g02040 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 388 IPR000504 GO:0003723
Gma07g02040 433 SMART rrm1_1 317 384 IPR000504 GO:0003723
Gma07g02040 433 SMART rrm1_1 104 179 IPR000504 GO:0003723
Gma07g02040 433 SMART rrm1_1 198 272 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g02040 Gma-Chr7 41984521 41988901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g02040 105 395 Eukaryotic Initiation Factors Gene Family AT4G34110 30.201 2.51e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g02040 - - gmx:100814564 697.582