Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01993 ATGGAATTCACCAAGAAGCGCAAAACCGAAGAGAACGGCGACACCACCGATTATCCGCCGCAGCAATCCACCGAAGAATCCCCAATCGCCGCCGTAGCCCCCGCCCCCCTCGCCGCCGAAGACATCCGCAAGATCCTACAACCGTTCTCCCAGGAGCAGCTCCTCGACCTCCTTCAATCGGCATCGCTCCGCCACCCCGACGTCCTCGATGCCGTGCGCGCCGTTGCGGACCTCGATTCCACCCTCCGGAAGCTCTTCGTGCGCGGTCTCGCCGGCGAGACCACGACGGAGACCCTCCGCGGCGTGTTCTCGGCGTTCGGCGAATTGGACGAGGCCATCGTGATCATTGACAAGGCCACGGGGAGGTCCAAGGGCTACGGCTTCGTCGTATTCAGCCACGTGGACGGCGCAATTCTCGCCCTCAAGGAGCCCAGCAAGAAGATCGACGGCCGCATGACCGTCACACAGCTCGCCGCCGCCGGAGGCCCCGGCGGCGGCGACGTGTCCCTCCGTAAGGTCTTCGTTGGGAACGTCCCCTTCGAGATTTCCTCGGAGAGGCTCCTCGACGAGTTCCTCAAGTTCGGAGAAGTCGAGGAAGGGCCTCTGGGGTTTGACAAATCGAGTGGCAAAAGCAGAGGTTTCGCCTTCTTCGTTTACAAGACCGAGGAAGGTGCAAGGGCTTCGTTGGTTGAACCATTGAAAACAATTGAGGGGCACCAAGTGATTTGCAAATTGGCTGTGGATAACAAAAAGACGAAACCTTTTGTTGCGGATCAGcatcagcagcaacatcatcagcaacatccgcagcaacaGATGCAGCAGCAAGGTTCAATGATGGTGCCTCAGTATGGTGGATATGGTGGTAATGGTTATGGGATGCAGCAGCAACAGCAGCAGCATCAGGTGCCACCGTATAATAATCAAATTCCGGTTGCCGGTGCTGGCGGGTATGGCCATGGATATGGTAATTCACAGATGGGCGGGCCGGTTTCTGGTGATTATGGTGCGAGGGTGCCTCCCAGTACTGGTGGGGGGTACCCTGATGGCTCGCAGTATGGCTTCCCTCCTTCATCGGGCCATCCGCCGCAGCCGCAGATTCCGATGGCGAGACCTCCTGGTGGAATGTACCAAGGCATGCCACCCTATTATTGA 1155 0.5671 MEFTKKRKTEENGDTTDYPPQQSTEESPIAAVAPAPLAAEDIRKILQPFSQEQLLDLLQSASLRHPDVLDAVRAVADLDSTLRKLFVRGLAGETTTETLRGVFSAFGELDEAIVIIDKATGRSKGYGFVVFSHVDGAILALKEPSKKIDGRMTVTQLAAAGGPGGGDVSLRKVFVGNVPFEISSERLLDEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVEPLKTIEGHQVICKLAVDNKKTKPFVADQHQQQHHQQHPQQQMQQQGSMMVPQYGGYGGNGYGMQQQQQQHQVPPYNNQIPVAGAGGYGHGYGNSQMGGPVSGDYGARVPPSTGGGYPDGSQYGFPPSSGHPPQPQIPMARPPGGMYQGMPPYY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01993 384 MobiDBLite consensus disorder prediction 1 30 - -
Gma07g01993 384 CDD RRM_RBM24_RBM38_like 83 157 - -
Gma07g01993 384 SMART rrm1_1 172 244 IPR000504 GO:0003723
Gma07g01993 384 SMART rrm1_1 84 156 IPR000504 GO:0003723
Gma07g01993 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 259 IPR000504 GO:0003723
Gma07g01993 384 SUPERFAMILY RNA-binding domain, RBD 78 161 IPR035979 GO:0003676
Gma07g01993 384 PANTHER GEO13361P1-RELATED 1 355 - -
Gma07g01993 384 Gene3D - 4 167 IPR012677 -
Gma07g01993 384 Gene3D - 168 303 IPR012677 -
Gma07g01993 384 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 355 - -
Gma07g01993 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Gma07g01993 384 SUPERFAMILY RNA-binding domain, RBD 168 256 IPR035979 GO:0003676
Gma07g01993 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 230 IPR000504 GO:0003723
Gma07g01993 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Gma07g01993 384 MobiDBLite consensus disorder prediction 333 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01993 Gma-Chr7 41315640 41322226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01993 167 246 C2H2 Transcription Factor Family AT2G19380 35.000 6.81e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01993 K12741 - gmx:100804230 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01993 07 41315640 41322226 Gma02g01279 02 14886766 14889056 GST