Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01934 ATGTTTGGTGGTAAATGTGAGAAAATGGTAGCAGTCACCCCTCAAACAGCGTCTAACAAATGGACACAGACACAACAGATAGATGATCACAAGGCCCCTATGGGAAGAATCATGGAAAAACCAAGCCAAGATCTTCTTCAGCAGCAGCAACAAGCCCTAAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTATAACAACTATAGTTTGTCACAGCCTAGGCATTTTTGCAAAGCTTGCAAGCGTTACTGGACAAGAGGTGGCACTCTCAGAAACGTTCCTGTTGGTGGTGGCTGCAGAAAAAACAAGCGTATGAAGCGTCCAACAAACGGTGATTCTTCTTCTGCTAACTCTCCTTCTTCGTCCACTCCTAGCGCCAGTTCAAACCCTCCTTCGCAGCCCCACATCGATAATATTATTGTTTCTGGCTCCGCCACAAACCATATAAATAATATCAACCCTTTGTTTTATGGTGGTGATGTGATGAATAATGTTCCTTTCCCAAAGTTTAATCTTCTTCAGTCTCAGCTGAATGCTCTTGGGTTAGGTTTTTCATCTGGGGTTAGAGAGAATGGGTTTAGCACTACTTCAAATAACAACTTTTTTTCTGCTTATAACTCTATCTTTGGCTCTTCTTCTTCCTCAACTTGTGCACCCTCAACTCCTGTTATGGCTTCCTTGCTGAGTTCCACTCTTCTGCAACAAAATTTTATGGGTGGTGGTGGTGGTGGGGTGAAGGGTCGTGATCATGATCAAGGTGACAATACTTTCCATGGCTTGGCACCGCTACAAGGGTTGCGAGTGGAAGGGGATAGTAATAATAATATTGGCTCAAAAGAAGTGAAAGGTGAAGGACAAAACAGGTTTGAGTGGAGCAATAATAATAACAACAACAACAACAATGGTGGTGGTGGTCAAAACCAGATGGAGCATGTGGCTTTGTCTGATCCTAATTCGCTTTATTGGAACACTGCAACGGGTTTGGGTGCTTGGAGTGATCAACCTAACATTGGTCCTTCAGTCACTTCTCTGATCTAG 1047 0.4384 MFGGKCEKMVAVTPQTASNKWTQTQQIDDHKAPMGRIMEKPSQDLLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRMKRPTNGDSSSANSPSSSTPSASSNPPSQPHIDNIIVSGSATNHINNINPLFYGGDVMNNVPFPKFNLLQSQLNALGLGFSSGVRENGFSTTSNNNFFSAYNSIFGSSSSSTCAPSTPVMASLLSSTLLQQNFMGGGGGGVKGRDHDQGDNTFHGLAPLQGLRVEGDSNNNIGSKEVKGEGQNRFEWSNNNNNNNNNGGGGQNQMEHVALSDPNSLYWNTATGLGAWSDQPNIGPSVTSLI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01934 348 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Gma07g01934 348 Pfam Dof domain, zinc finger 51 107 IPR003851 GO:0003677|GO:0006355
Gma07g01934 348 MobiDBLite consensus disorder prediction 98 135 - -
Gma07g01934 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 333 IPR045174 GO:0003700|GO:0006355
Gma07g01934 348 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Gma07g01934 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 5 333 - -
Gma07g01934 348 MobiDBLite consensus disorder prediction 112 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01934 Gma-Chr7 40577419 40578664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01934 53 348 C2C2-Dof Transcription Factor Family AT1G28310 40.244 1.38e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma07g01934 zf-Dof 1.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01934 - - gmx:778101 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01934 07 40577419 40578664 Gma07g01934 07 40577419 40578664 ECH
Gma07g01934 07 40577419 40578664 Gma15g00720 15 5915502 5917027 PCT
Gma07g01934 07 40577419 40578664 Gma13g02107 13 36199939 36201212 PCT
Gma15g00720 15 5915502 5917027 Gma07g01934 07 40577419 40578664 PCT
Gma13g02107 13 36199939 36201212 Gma07g01934 07 40577419 40578664 PCT