Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01931 ATGAAGTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCTGGGTGAGGAGTTTAAAGGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGCCCAGATCTCTCTGTTTTGAACCTGGTAATTGTGAAGAAGGGTGAGAGTGATTTGCCAGGTCTCACTGATGTTGAGAAGCCAAGGATGAGGGGTCCTAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACCTGTCCAAGGAGGACGATGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTACAACAAAAGCTGGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGACTAGTCACTCCTTTGACACTCCAAAGGAAACGAGCAAGGATTGCCGACAAGAAGAAGAGAATTGCTAAGGCAAAATCAGAAGCAGCAGAGTATCAAAAACTCCTCGCTTCCAGATTGAAGGAGCAGAGAGATCGCCGGAGTGAGAGCTTGGCGAAGCGGAGATCCAAACTCTCCAGTGCTGCCAAACCAACTGTTACAGCATAG 750 0.476 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKLSSAAKPTVTA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01931 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Gma07g01931 249 Gene3D - 133 234 - -
Gma07g01931 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Gma07g01931 249 MobiDBLite consensus disorder prediction 218 237 - -
Gma07g01931 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 - -
Gma07g01931 249 Coils Coil 189 216 - -
Gma07g01931 249 MobiDBLite consensus disorder prediction 218 249 - -
Gma07g01931 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma07g01931 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma07g01931 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01931 Gma-Chr7 40554440 40557160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01931 1 248 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.289 2.49e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01931 K02991 - gmx:100786559 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01931 07 40554440 40557160 Gma15g00716 15 5886101 5888502 PCT
Gma07g01931 07 40554440 40557160 Gma13g02112 13 36223429 36225654 PCT
Gma15g00716 15 5886101 5888502 Gma07g01931 07 40554440 40557160 PCT
Gma13g02112 13 36223429 36225654 Gma07g01931 07 40554440 40557160 PCT