Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01922 ATGACTGGTAAAAGTTCAATTACTCAGCGGACAGCGAGACATGGCTCACGCAAACCGAGAAAATTTGATTTAGCTGATCTAGAATGGACCAATACGATTCCCGAGTGTCCAACATACCACCCATCAGAGCATGAGTTTGAGCATCCTTTAGTTTATCTGCAGAAGATTGCACCTGAGGCTTCTGAATATGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCTAACCCAGCTGCTTTTGTCTTAATGAAAGAGAAAAAAGATTTCAAATTTGAAGCAAATGTACAGCCTCTTCGTCTTTCTAAATGGATTGATGAAAAGGATATAATATCCTTCTCTCTGAGAGGCAGAAAATATACATACCATGAATTTGAGGCTCTTGCAAACAAGGCTTTTTTCAGTAGATTTCATAGTTCAGGAGGTCTTCCTTCTTCATATGCGGAAAAGGAGTTCTGGCATGAGATGGGCTCTGGAGAGAGGGAAACAGTTGAGTATGGAGTCAATGTTGAATGTAGTGCCTTTTCATGTGATCATAATGACAGACTTGGAACAAGCAAATGGAACTTGAAGTTGTTTTCTTTTAACAACGGCACTCCGGCAACTGATTATTGGTTGCCATACATTGCTTCTAAAAATAATTTCTCACGGCTGCCACCATCCCTGTTACGTTTAGTCGACAGGGAAATTCCCGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATAAATTATCATCACTCAGGTGCAAATAAAACTTGGTATGGCGTGCCTGGTTATGCAGCCTCTCAATTTGAAAAGACTGTCTTACAACATGTGTACTCTAATAAGATCTTAACAAAACATGGAGACGATGGAGCTTTCAAGTTTCTTGCACAGAAAACAACCATGTTCCCACCAAATGTCATGTTACAACATGATGTGGCAGTTTACAAAGCTGTGCAGAAGCCAGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTAATGGTGATTGGTTTCAACTTCGGGCTGCAGCTAGCAGGCGTTATGCACATCTCAGAAGGATGCCTTTAATTCCATATGAGGAACTTCTTTCTAAAGAGGCAATGCAGGTTTACAAGTCCTCAAGAGTCAGAAGTTCCAAGAAGAAGCCTGAAGACACAGCATCTTATCAAAGCTATTATACTGCCTTTCTTGCATCTTATGCAATCTTATAA 1293 0.4006 MTGKSSITQRTARHGSRKPRKFDLADLEWTNTIPECPTYHPSEHEFEHPLVYLQKIAPEASEYGICKIVSPIAASNPAAFVLMKEKKDFKFEANVQPLRLSKWIDEKDIISFSLRGRKYTYHEFEALANKAFFSRFHSSGGLPSSYAEKEFWHEMGSGERETVEYGVNVECSAFSCDHNDRLGTSKWNLKLFSFNNGTPATDYWLPYIASKNNFSRLPPSLLRLVDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPGYAASQFEKTVLQHVYSNKILTKHGDDGAFKFLAQKTTMFPPNVMLQHDVAVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFANGDWFQLRAAASRRYAHLRRMPLIPYEELLSKEAMQVYKSSRVRSSKKKPEDTASYQSYYTAFLASYAIL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01922 430 ProSiteProfiles JmjC domain profile. 206 376 IPR003347 -
Gma07g01922 430 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 424 - -
Gma07g01922 430 Pfam jmjN domain 37 69 IPR003349 -
Gma07g01922 430 SUPERFAMILY Clavaminate synthase-like 193 394 - -
Gma07g01922 430 Pfam JmjC domain, hydroxylase 236 359 IPR003347 -
Gma07g01922 430 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Gma07g01922 430 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 2 424 - -
Gma07g01922 430 SMART JmjN_1 35 76 IPR003349 -
Gma07g01922 430 Gene3D Cupin 36 423 - -
Gma07g01922 430 SMART cupin_9 206 376 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01922 Gma-Chr7 40442197 40444779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01922 33 400 JUMONJI Transcription Factor Family AT2G34880 33.413 1.95e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma07g01922 JmjC 1.6e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01922 - - gmx:100793144 716.072