Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01905 ATGGCCTTAGAGCACTACCTTTCGCAGGAATGGAAAACCagcccgagcccgagcccgagcccgagcccgagcccCATGACAGTGACAGAAAACCTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTGGTCACCCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCAGATGAGCACCCTCAATGCCCTGTTTGCAAGGATGACATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGGCATTGCTCATAGTGACCGTGATGGAAAGGCATCATCCTATAGAGGCAGTTTTATACCACCAAGACCACCTGCTTTGGGTGCTCAATCTCTCATGTCAACATCATCTCAAAGTGCTCAACAACTTCCATATCGCAACCCTTATCAGAATCAGCATTTCAACCCTCCTTTGTACCAAGATGAGGATGAATCATCATCACAAATGCTGAATCCTGGTGCCAACATGGTGGCACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATGCCAGAGTCTTTGGCAACTCAGAAAATTTATACAACTATCCAAATTCTTATCACCTGGGGGGAAGTAATAATAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAACAAATCATTGAACAGAATCTCAATTTTTCTGTTTTGTTGCTTCCTTCTGTGTCTTATTGTCTTCTAA 759 0.4295 MALEHYLSQEWKTSPSPSPSPSPSPMTVTENLDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDICHTTMVPLYGRGQGIAHSDRDGKASSYRGSFIPPRPPALGAQSLMSTSSQSAQQLPYRNPYQNQHFNPPLYQDEDESSSQMLNPGANMVAPGFPHLVVGMFGEMFYARVFGNSENLYNYPNSYHLGGSNNNSPRLRRQEMQANKSLNRISIFLFCCFLLCLIVF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01905 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 252 - -
Gma07g01905 252 Pfam Zinc finger, C3HC4 type (RING finger) 38 84 IPR018957 GO:0046872
Gma07g01905 252 ProSiteProfiles Zinc finger RING-type profile. 38 85 IPR001841 -
Gma07g01905 252 CDD RING-HC_AtRMA_like 36 85 - -
Gma07g01905 252 MobiDBLite consensus disorder prediction 1 26 - -
Gma07g01905 252 SMART ring_2 38 84 IPR001841 -
Gma07g01905 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 252 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gma07g01905 252 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Gma07g01905 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 105 IPR013083 -
Gma07g01905 252 SUPERFAMILY RING/U-box 30 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01905 Gma-Chr7 40294914 40295672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01905 19 238 C3H Transcription Factor Family AT4G27470 39.732 2.33e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01905 K10666 - gmx:100779793 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01905 07 40294914 40295672 Gma15g00696 15 5713846 5714544 PCT
Gma07g01905 07 40294914 40295672 Gma13g02130 13 36397949 36400252 PCT
Gma15g00696 15 5713846 5714544 Gma07g01905 07 40294914 40295672 PCT
Gma13g02130 13 36397949 36400252 Gma07g01905 07 40294914 40295672 PCT