Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01895 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGGAATCCTTCTGATACTCCTAATGAGATTGATGGCTTTCCACTTGATAATGTTAAGAATTTCTCTGATAAAGACCTGAGACTGGCCACTGATAACTATAATCCAAGCAAAAAGCTAGGACGAGGAGGTTTTGGTATCGTGTACCAGggaaccttaaaaaatggaaggcaggtagcagtgaagacactttcagctgggtcaaagcagggagttcgtgaatttttaactgaaatcaaaactatatcaaatgttaagcatccaaaccttgttgaattggttggttgctgcgttcaagaacctaatcgcatattggtgtacgaatttgtggaaaataacagccttgatcgtgcattactagGCTCAAGAGGTTCAAATATCAGATTAGACTGGAGAAAAAGATCTGCTATTTGCATGggtactgcaagaggtcttgcatttcttcacgaagaacatgtgccacacattgtgcacagagacatcaaggcaagcaacatactacttgacagagacttcaatccaaaaataggagattttgggttggctaaattgtttccagatgacatcactcacattagcacaaggatagctggaacaactggttacttggcaccagagtatgcaatgggtggccagttaaccatgaaggctgatgtatacagttttggggttcttatacttgaaataatcagtggcaaaagCAGTGCAAGGACAAACTGGGGAGGGTCCAACAAATTTCTATTGGAATGGGCTTGGCAACTGTATGAAGAGGGGAAACTGTTGGAGCTTGTGGATCCAGACATGGTTGAATTCCCCGAGAAAGAGGTAATAAGGTACATGAAGGTTGCATTTTTCTGCACACAAGCAGCAGCAAGTAGAAGGCCAATGATGTCCCAGGTTGTGGATATGCTGTCCAAGAACATGAGGCTGAATGAAAAGCAACTAACAGCACCAGGGTTGTTCCAGGATTCAGGAGCTTCCTCTCAAAAGAAGTCATCCTTTGAATCCACTGGCTATCAATTTAGCTCTAACCCTTCCAGTATTACTCAGTTGGCCCCACGGTGA 1104 0.2428 MSCGCFGASTLKKKRNPSDTPNEIDGFPLDNVKNFSDKDLRLATDNYNPSKKLGRGGFGIVYQGTLKNGRQVAVKTLSAGSKQGVREFLTEIKTISNVKHPNLVELVGCCVQEPNRILVYEFVENNSLDRALLGSRGSNIRLDWRKRSAICMGTARGLAFLHEEHVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEIISGKSSARTNWGGSNKFLLEWAWQLYEEGKLLELVDPDMVEFPEKEVIRYMKVAFFCTQAAASRRPMMSQVVDMLSKNMRLNEKQLTAPGLFQDSGASSQKKSSFESTGYQFSSNPSSITQLAPR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01895 367 MobiDBLite consensus disorder prediction 332 367 - -
Gma07g01895 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma07g01895 367 MobiDBLite consensus disorder prediction 1 27 - -
Gma07g01895 367 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Gma07g01895 367 PANTHER - 1 359 - -
Gma07g01895 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Gma07g01895 367 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Gma07g01895 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 359 - -
Gma07g01895 367 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Gma07g01895 367 PIRSF ILK 9 329 - -
Gma07g01895 367 CDD STKc_IRAK 53 319 - -
Gma07g01895 367 SUPERFAMILY Protein kinase-like (PK-like) 31 337 IPR011009 -
Gma07g01895 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gma07g01895 367 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01895 Gma-Chr7 40197191 40201893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01895 10 366 Receptor kinase-like Gene Family AT1G56120 47.911 3.54e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma07g01895 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01895 - - gmx:100775344 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01895 07 40197191 40201893 Gma15g00681 15 5591182 5595098 PCT
Gma07g01895 07 40197191 40201893 Gma13g02146 13 36540009 36543070 PCT
Gma15g00681 15 5591182 5595098 Gma07g01895 07 40197191 40201893 PCT
Gma13g02146 13 36540009 36543070 Gma07g01895 07 40197191 40201893 PCT