Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01863 ATGGCGGATGCTGACGTGGACCTTTCGGAACTGTTCTCTGGTAATGCCGACGAAGACGACGACATGTTTTATATAGATATTCAGACCGTCCAGAAGGTTCTTGATGAAGACGATGATTGTTACTTTCAGGAGAATAGTCCCGAGGATTCTTCATCAAAAAATGTTTCACCTAGTGAATCTGGCATTCATGACACTTTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACCATATCTTTCTAAGTTGGGCTTTGCAAATTCAGTCACGAGCTGTTCTCCATTCTGCTCAGATGTGTCAGATTTCGGGGTCAGAGGTTCAGTTGGTGTATCTGATTCTGCAGCTAATTCTATGCTTGATTGTGAACGTGAAAACCAGGGACCTCAATCTCGGGCTTGCTCTTCCCCAAATGCTTTTCCTGGTAATTTCAGTGATTCATTTTCTCCAGGTGAAAGTGATGAGGTTTTTCGCACAGAAAGGACCCAAGTTTCTAAACATGAGATACCTGCATATAGTGTAGAAACAAGTTTCCCTGAGGCACAGTCAAACAATATATCAATTTGTGGAGATAATTTGAATCTGAGTATGTGGATTGGTGAAAATGAGAGCCAATTCAAGCATGTGAGAGAGGATGTTGAATCTGAACATGCTTCACTCAGTTCTATTGTTGACAATGATGATGTAAATATTGAAGGTTATGTTGAAGACATCATTGCAGGAGTTTCTGGGCAACAGGAAAATGACTCGTGTACATCTTTTGAAGCATCATTTATGGATGCTGATAGATCTTTGCATGTCACAACTTCAACTGATTCTAGTGTTGGTCAAGGTTCCCATGTTTCCAGTGATTTCATTGACTACCATGTATCTCCAAACTGTTACCAGGGAACACATGATGGACCCTTTGTTGCTGACTCTTCTCTTGGTTTTGTGCCTAATGCTATTAATTCTCAATTGTGGCCATATGAAGAAATGATGAATAACATTAAGGCTGAAAATGTGGAGTTAAATGCTGATATTGCATATATGAGTAATGGCATGCCTTCAAGCACTACTGGGTGGATGCCTTTTCAGGATAGTCAACTTATGTTAGCTGATAATGGTTATCCATCATTTCATTCTGGTAATTTTGATGACATGTCATCACTGTCTCTTTCAGCTTGTGCTTCATACATGTCATATGGAGACCATTACCAGAACAATTTTCACCGTGATGATGCCGAGTTCAATGTAGGCCAAGAGGTGAAACAAACACCTGGTATTTTTTCTTCTGAAGGGTGTCAAGCTTACCAGTGTTTTCAGAATGAGGATAATTATGCAGTTATATCTGGGATATCCAATCAATATCAAGATAGCATTGGCAGAACTGCTAGTTTTCAAGGAAACTTTGACAATTTGAATTTAAAAGCTGCAGATAATTCTTGGCTCCATCCCCAAGAACTAATTACCAGTGAGAAGCAGTTTGGTTGTGTTAAGAGAGAAGGAGGGATTCAACATAACTTTATTGATTCTCATCTTTCAAAAGGAAGAACTGAGAATTTCCATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACGAGTCGACCCGCAGGCATTGGGAATTCCCTTAATATATCTCAATCTTGTAGATATGTTGGAAGTACGGTCGGAAGTACAAGGATGAAGGCATGTGATGAACGAAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCTGAAGTTAGTCCACCAGAAGGATTGTTGGCAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGATTCAAAAGGAAACATCAAGTTTAAATTGCTCAGGAGGAATTCTTGCAGACGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAGGAAAGACCTACATTACTTAATGGGTGCACCACTGCCCGAAAAAGTGAATTGGAAACTCTGGATGTGGATGATGACATGCTTCCTCAGAATGGTATAGTAAAGGAAGAATCTAATATGTGTGAGGATAAGCCAAGTGGATATCCAATGAATTTGTTGAAGCAAGCAAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGCCCGACTAGTGTCCTGCGTCAATGGGCTGAGGAGTTGCGTAGCAAGGTAAATGGTCAGGCAACTCTCTCTGTGCTAGTATACCATGGAAGCAATCGAACAAAAGATCCTTATGAGGTGGCCAAGCATGATGTTGTCCTAACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCTCCAGCTGACAAAGATGACGAGGAAAAGGAAATTTTTGAAGATCATGCTACACCAAGTAGGAAAAGAAAAAGCCCTTCTAATTCTAGTAAAAGTGGCAAGAAGAAATTGGATGGCACAAATCTTGAAGCTGTTGCTCGGCCACTTGCAAAGGTGTCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATTCTGACCATGCATCATTTTGTACTAGAATTAAGAACCCAATTAGCAGAAATCCAGCAAACGGGTATAGAAAGTTGCAAGCTGTCTTGAAGACAATAATGTTACGCCGAACGAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAGTATATAGAGCTGAAAAAAGTTGATTTTTCAATGGAGGAACGTGATTTCTATTCCAAACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTCTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACAAATCTCTCTTCTGAAATGTTTAGAGGTTTCCTTGGCCCTCTGTAGCATTTGTAATGATCCTCCTGAAGATGCAGTTGTCTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATCTGTGAACATCTTTCTGGTGATGACAATCAGTGCCCTGCTGCAAATTGCAAAAGTCAACTGAGCACATCTATGGTATTTTCAAAAGCCACACTGAACAGTTGTCTTTCTGACCAGGGTTGTGATAATTCACCCAGTTGCTCTGGTCCTGAAGCCGAAGAAGCTGAACCTTGGTCCGAAAGTAAGCCATATGATTCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAGTCATTGTGTAAGCCACAGTGCTACACATCAAAAAGTACTTCTGAGCATAGCACTTTCAGGGAAGATAAAAATTGCCTTGGGAACCCCTCCATTGCTAAGAATGGGAAATCCTTAAAAGATTCTCCTGAGAGTCAAAATTTGTCTGATGAGAATAGAAGCTCTAATGCTTCAGTTACTGTTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAATTCTTCAATTAATTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACAATTGTCCCGAGGTAACTGTTATAATTATGTCTTTGAAAGCTGCCAGTCTTGGTCTCAACTTGGTAGTAGCATGCCATGTTCTTATGTTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGCCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACAGTTGAAGATCGTATTCTAGCTCTGCAGCAAAAGAAGAGAATGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGATCGTCAGACTCGCCTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA 4041 0.4076 MADADVDLSELFSGNADEDDDMFYIDIQTVQKVLDEDDDCYFQENSPEDSSSKNVSPSESGIHDTFQIQNGSQVLEEPYLSKLGFANSVTSCSPFCSDVSDFGVRGSVGVSDSAANSMLDCERENQGPQSRACSSPNAFPGNFSDSFSPGESDEVFRTERTQVSKHEIPAYSVETSFPEAQSNNISICGDNLNLSMWIGENESQFKHVREDVESEHASLSSIVDNDDVNIEGYVEDIIAGVSGQQENDSCTSFEASFMDADRSLHVTTSTDSSVGQGSHVSSDFIDYHVSPNCYQGTHDGPFVADSSLGFVPNAINSQLWPYEEMMNNIKAENVELNADIAYMSNGMPSSTTGWMPFQDSQLMLADNGYPSFHSGNFDDMSSLSLSACASYMSYGDHYQNNFHRDDAEFNVGQEVKQTPGIFSSEGCQAYQCFQNEDNYAVISGISNQYQDSIGRTASFQGNFDNLNLKAADNSWLHPQELITSEKQFGCVKREGGIQHNFIDSHLSKGRTENFHVEEDPDVCIIEDISHPAPTSRPAGIGNSLNISQSCRYVGSTVGSTRMKACDERNILRVALQDLSQPKSEVSPPEGLLAVPLLRHQRIALSWMIQKETSSLNCSGGILADDQGLGKTVSTIALILKERPTLLNGCTTARKSELETLDVDDDMLPQNGIVKEESNMCEDKPSGYPMNLLKQAKGRPSAGTLIVCPTSVLRQWAEELRSKVNGQATLSVLVYHGSNRTKDPYEVAKHDVVLTTYSIVSMEVPKQPPADKDDEEKEIFEDHATPSRKRKSPSNSSKSGKKKLDGTNLEAVARPLAKVSWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYSDHASFCTRIKNPISRNPANGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSMEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPQEKQISLLKCLEVSLALCSICNDPPEDAVVSVCGHVFCNQCICEHLSGDDNQCPAANCKSQLSTSMVFSKATLNSCLSDQGCDNSPSCSGPEAEEAEPWSESKPYDSSKIKAALEVLKSLCKPQCYTSKSTSEHSTFREDKNCLGNPSIAKNGKSLKDSPESQNLSDENRSSNASVTVVGEKAIVFSQWTRMLDLLEACLKNSSINYRRLDGTMSVVARDKAVKDFNNCPEVTVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRMMVASAFGEDGTGDRQTRLTVDDLKYLFMM 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01863 1346 MobiDBLite consensus disorder prediction 123 151 - -
Gma07g01863 1346 ProSiteProfiles Zinc finger RING-type profile. 1029 1068 IPR001841 -
Gma07g01863 1346 ProSitePatterns Zinc finger RING-type signature. 1044 1053 IPR017907 -
Gma07g01863 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 582 913 IPR027417 -
Gma07g01863 1346 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 611 875 IPR014001 -
Gma07g01863 1346 SMART ring_2 1029 1067 IPR001841 -
Gma07g01863 1346 MobiDBLite consensus disorder prediction 45 63 - -
Gma07g01863 1346 Gene3D - 564 660 IPR038718 -
Gma07g01863 1346 SMART ultradead3 592 890 IPR014001 -
Gma07g01863 1346 MobiDBLite consensus disorder prediction 40 63 - -
Gma07g01863 1346 SMART helicmild6 1205 1288 IPR001650 -
Gma07g01863 1346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 991 1092 IPR013083 -
Gma07g01863 1346 CDD SF2_C_SNF 1191 1298 - -
Gma07g01863 1346 MobiDBLite consensus disorder prediction 1159 1183 - -
Gma07g01863 1346 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 533 1345 - -
Gma07g01863 1346 MobiDBLite consensus disorder prediction 766 788 - -
Gma07g01863 1346 Pfam Helicase conserved C-terminal domain 1188 1288 IPR001650 -
Gma07g01863 1346 Gene3D - 688 775 IPR038718 -
Gma07g01863 1346 Gene3D - 789 914 IPR038718 -
Gma07g01863 1346 Gene3D - 1093 1344 IPR027417 -
Gma07g01863 1346 SUPERFAMILY RING/U-box 1027 1089 - -
Gma07g01863 1346 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 533 1345 - -
Gma07g01863 1346 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1182 1341 IPR001650 -
Gma07g01863 1346 Pfam SNF2-related domain 615 990 IPR000330 GO:0005524|GO:0140658
Gma07g01863 1346 MobiDBLite consensus disorder prediction 763 804 - -
Gma07g01863 1346 MobiDBLite consensus disorder prediction 123 152 - -
Gma07g01863 1346 Pfam Zinc finger, C3HC4 type (RING finger) 1029 1065 IPR018957 GO:0046872
Gma07g01863 1346 CDD DEXDc_SHPRH-like 596 913 - -
Gma07g01863 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 921 1345 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01863 Gma-Chr7 39896708 39905480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01863 522 1345 RAD5 or RAD16-like Gene Family AT1G61140 60.973 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma07g01863 SNF2_N 1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01863 - - gmx:100802436 2400.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01863 07 39896708 39905480 Gma15g00662 15 5433604 5442348 PCT
Gma07g01863 07 39896708 39905480 Gma13g02167 13 36714346 36723801 PCT
Gma15g00662 15 5433604 5442348 Gma07g01863 07 39896708 39905480 PCT
Gma13g02167 13 36714346 36723801 Gma07g01863 07 39896708 39905480 PCT