Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01834 ATGTCGAAAACTCCGAAGGAGAAAGACGCGGAGGAGCCTCTGCCGGACCACCTCCGGTGCGGGCGCACCGATGGGCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGAGAATCTCAAGCTCTGCGAGATTCACTACCTCCAAGGTCGCCACCGCCAGTACAAGGAGAAGGTTCCCGAGTCGCTGAAGCTTCAGCGCAAGCGCAAATCAAACAACGACGAAGAAGAGGAACCCGAGCCTGACAACAACAACAACAACAATGTTCTCGACGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCATGCTTTCCGGGGATTCCGATGATGGTTCTCCGGCGAGGAAGAAGGCGCTGAAGCAGGGCGATATGCAGCTGGAGCTCTTGAGGATGGTGCTGAAGAGAGAGGCTGAGaagaagaagagcaagaacaagagaaataataacaacaagaagaagaacaataagaagaaggagaataagaagaagaaggagGAAAAAGAGGAATTGTGTTACACTAAAGAAGAGTTGAGAAGAGAATTGCCCAACGGTGTGATGGAAATCTCTCCGGCTTCGCCGACGCGTGATTACAACAATGTGGGTTCGCATTGTGATGTGAAAGTTGGTGTTGATAGTAAAACTGTTGCTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCTGCGGGGAAGTTGCAGATTGTCCCGTATGGATCAAAGGGTAAGAGGAAGAAATGTCATTGGTGCCAGAGAAGTGAGTCTGGGAATCTCATTCAGTGTTTGAGCTGTCAGAGGGAGTTCTTCTGCATGGATTGCGTAAAAGAGCGGTATTTTGACACTCAAAATGAAATTAAGAAGGCATGTCCAGTTTGTTGTGGAACTTGCACTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGACTGGTAAGAGCAAAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCAAATAAGTAAAGATCAGAACATTGAGCTAGAAGCAGAAGCAAAAGTTAAAGGTAGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGGATTTGGCTACAATGAGAAAAACTATTGCAATCACTGCAAAACACCCATTTTGGATCTCCATAGAAGCTGTCCTAGTTGCTCATATAGCCTATGCTCAAGTTGTTGTCAGGAATTAAGTCAAGGAAAAGCTTCTGGAGAAATTAACTCATCTGTGTTCAAGCGACCTGGTAAAATGAAACCTTGTGGTGCTAATGAGAGCCATAACTTGGATGAGAAAGCCACATCTAGTGGCAATTTAACTGATACTTCAATGTTGCCCGAGTGGAAAAATGGTAATGGCATTGATACTCTATCATGCCCTCCTACAGAGCTTGGTGGTTGTGGTAAAAGCCACCTTGAGTTGAGATCTGTTTTCCCCTCGAGTTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCGAGCTGCTCGTTGTGTTTTGACACTGATCACAGTACTAACAGATACAAGCAGTTGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCCACAGTGATGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGTGGAAAAGGCCATCCTATAGTTGTCCAAGATGCACTCCGAAGTACATCAAACCTCAGTTGGGATCCACTGACCATGTTCTGTACTTATCTTGAGCAGAGCATTACAAGATATGAGAAAAATAAAGACTTGCTTGAATCTTGTTTGGATTGGTGGGAGgtggaaattaacattaggcagtactttactgggtctgtcaaacgtcgtcctcagagaaacacttgggatgagatgctgaaactaaaagggtggctttcttcccaaatattcaaagagcagtttccagctcattttgctgaggtaattgatgctctaccagttaaagaatacatgcatcccctgtccggtcttctgaatttagctgcaaatttgccacatgggagtgcaaaacatgacattgggccatatgtctacatttcttatggctctgctgacaaagaaactgattcagtgacaaagctctgctatgactcatatgatgtgGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTATAGAACAACTTACCAAAATAAGAAAACTGCTGAAAAAGCACAAAACTCTGTGTCAAATGGAGACTATTGCTACTGAGGGGCCACAGGAACAGAAATTGAATGGAATACCATTATTGCATGGTCCAGAAACAGAGCGAAAAGGCTCACGGAGTATGGTTGAAGGAATGAACTTTTTCCGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAGCTAAAAAAGTTTCTAGTCAGAGCATGGACAGCAATGGGGAATGTGATTTCATTTCTGATTCTGATTCTGGATCTGCTTTACTTCTCCTTGGGACTGTTCAAACTGCTGAATTGTCAGAACACGATAATCCTAGAAATCCCTTTAAAAGCTCAAAAAGACATAAAAATAAGTTTACTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTTCCAAAGCTCATCGAATACCTTGAAAGACACTATGATGAATTTTCTTATACCCATGACTATCACAAGAAGatggttcatccaattctagatcagagcatttttctagacagtactcacaaaatgagactaaaggaggaatttaagattgaaccatggacttttcagcaacatgttggacaagctgtcgtcattcctgctggatgtccataccagatcaggaattctaagtctagtgttcatgcggtattggaatttgtgtcccctgaaaatgttaccgagggtatccagttgttcgatgaggtccgactattgcctgaagaccataaagcaaaagcagacatgctggagGTTAAGAAAATGGCGCTTCATAGCATGAATACAGCAATTAAAGAAATTAATGCTCGGACAAATTTATATCTAGTAAGATGGTTCAGTTGTCTCCATCTTCCATAA 3129 0.3359 MSKTPKEKDAEEPLPDHLRCGRTDGRQWRCRRRVKENLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKSNNDEEEEPEPDNNNNNNVLDDNVESRARRTSRIVKKKRMLSGDSDDGSPARKKALKQGDMQLELLRMVLKREAEKKKSKNKRNNNNKKKNNKKKENKKKKEEKEELCYTKEELRRELPNGVMEISPASPTRDYNNVGSHCDVKVGVDSKTVAPRYFRSKNVDRVPAGKLQIVPYGSKGKRKKCHWCQRSESGNLIQCLSCQREFFCMDCVKERYFDTQNEIKKACPVCCGTCTCKDCSASQCKDSESKEYLTGKSKVDRILHFHYLICMLLPVLKQISKDQNIELEAEAKVKGRKNISDIQIKQVGFGYNEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCQELSQGKASGEINSSVFKRPGKMKPCGANESHNLDEKATSSGNLTDTSMLPEWKNGNGIDTLSCPPTELGGCGKSHLELRSVFPSSWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHSTNRYKQLQEAALREDSNDNYLFCPTVMDISGDNFEHFQKHCGKGHPIVVQDALRSTSNLSWDPLTMFCTYLEQSITRYEKNKDLLESCLDWWEVEINIRQYFTGSVKRRPQRNTWDEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVKEYMHPLSGLLNLAANLPHGSAKHDIGPYVYISYGSADKETDSVTKLCYDSYDVVNIMTHTTDAPLSIEQLTKIRKLLKKHKTLCQMETIATEGPQEQKLNGIPLLHGPETERKGSRSMVEGMNFFRRVNRTSCISTEAKKVSSQSMDSNGECDFISDSDSGSALLLLGTVQTAELSEHDNPRNPFKSSKRHKNKFTEHLGAQWDVFRRQDVPKLIEYLERHYDEFSYTHDYHKKMVHPILDQSIFLDSTHKMRLKEEFKIEPWTFQQHVGQAVVIPAGCPYQIRNSKSSVHAVLEFVSPENVTEGIQLFDEVRLLPEDHKAKADMLEVKKMALHSMNTAIKEINARTNLYLVRWFSCLHLP 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01834 1042 ProSiteProfiles Zinc finger RING-type profile. 252 297 IPR001841 -
Gma07g01834 1042 MobiDBLite consensus disorder prediction 144 165 - -
Gma07g01834 1042 Pfam WRC 15 56 IPR014977 -
Gma07g01834 1042 PANTHER PROTEIN B160 11 1028 - -
Gma07g01834 1042 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Gma07g01834 1042 Pfam JmjC domain, hydroxylase 880 971 IPR003347 -
Gma07g01834 1042 MobiDBLite consensus disorder prediction 443 460 - -
Gma07g01834 1042 SUPERFAMILY Clavaminate synthase-like 566 1017 - -
Gma07g01834 1042 MobiDBLite consensus disorder prediction 49 74 - -
Gma07g01834 1042 MobiDBLite consensus disorder prediction 435 460 - -
Gma07g01834 1042 ProSiteProfiles JmjC domain profile. 686 994 IPR003347 -
Gma07g01834 1042 MobiDBLite consensus disorder prediction 1 26 - -
Gma07g01834 1042 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 1028 IPR045109 GO:0032454|GO:0033169
Gma07g01834 1042 MobiDBLite consensus disorder prediction 105 143 - -
Gma07g01834 1042 SMART cupin_9 667 994 IPR003347 -
Gma07g01834 1042 Coils Coil 139 185 - -
Gma07g01834 1042 MobiDBLite consensus disorder prediction 49 173 - -
Gma07g01834 1042 Gene3D Cupin 555 1003 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01834 Gma-Chr7 39531839 39538119 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma07g01834 JmjC 6.4e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01834 K15601 - gmx:100787798 1970.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01834 07 39531839 39538119 Gma08g00573 08 4727377 4733349 GST
Gma07g01834 07 39531839 39538119 Gma15g00628 15 5144401 5149832 PCT
Gma07g01834 07 39531839 39538119 Gma13g02204 13 37001858 37007267 PCT
Gma15g00628 15 5144401 5149832 Gma07g01834 07 39531839 39538119 PCT
Gma13g02204 13 37001858 37007267 Gma07g01834 07 39531839 39538119 PCT