Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01829 ATGGACTCACATCTCCCCGACCACTTCAAGTGTCCAATTTCCCTCGAAATAATGTCGGACCCTGTCATTCTCTCTTCGGGTCACACCTTCGACCGTTCCTCCATCCAACGTTGGCTCGACGCGGGTCACCGAACATGTCCAATTACCAAACTACCCCTCCCCGACCACCCCGCCCTCATCCCCAACCACGCGCTGCGAAGCTTAATCTCCAACTACGCATTCCTCTCACCTCTCCACCATACCGTTTCCCAACCCGAAGCCCTAATTTCAACCCTCGCCTCCAATTCTTCGTCTTCCGATTCCAAAATTGAGGCTCTTAAGCACCTCACGCGCTTATCCAAGCGCGACTCGGCGTTCCGGCGGAGGCTGGCGGAGTCCGGCGCCGTCCCCGCCGTGATCGCCGCCGTGGACGACCCGAGCCTCCAGGAGAGGGCGCTCCCGCTCCTCCTCAACCTCACCCTCGACGACGACTCCAAGGTCGGCCTCGTCGCCGAAGGCGTGGTCGCGCGCGTGGTGGAGGTGCTCCTCCACGCGCCGACGCCGGACTGCCGCGCCGTTGCGGCCACCATCGTCACGAGCCTCGCGGTCGTCGAGGTGAATAAGGCCACCATCGGCGCGTTTCCGGCGGCGATCGCGGCGCTCGTGGCGATCCTCCGCGACGGCAAGGGGCGGGAGAGGAAGGAGGCCGCCACCGCTCTCTACGCGCTCTGCTCTTTTCCGGATAACCGGAGAAGAGCCGTCAATTGCGGCGCCGTGCCGATTCTCCTCCAAAACGTCGAAATTGGACTTGAACGCTGTGTTGAGGAAATGGTTCTGGTGGCTCTGGAAGAAGGGGTTCTAGAAGCTTCTCTTGGGTTTGTGGAAGATGATAATGAGAAAGTGAGGAGGAACGCGTGTAATTTGATTAAGAAAGATTTGTTTGTCTCTCCTCTGTTGAGATTCATCTATCACAATTCACAAGATTGGTTTGGTCAACACACTTCTTTCTGGCATTTGATAGCTTTCTAG 1008 0.5813 MDSHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHPALIPNHALRSLISNYAFLSPLHHTVSQPEALISTLASNSSSSDSKIEALKHLTRLSKRDSAFRRRLAESGAVPAVIAAVDDPSLQERALPLLLNLTLDDDSKVGLVAEGVVARVVEVLLHAPTPDCRAVAATIVTSLAVVEVNKATIGAFPAAIAALVAILRDGKGRERKEAATALYALCSFPDNRRRAVNCGAVPILLQNVEIGLERCVEEMVLVALEEGVLEASLGFVEDDNEKVRRNACNLIKKDLFVSPLLRFIYHNSQDWFGQHTSFWHLIAF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01829 335 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Gma07g01829 335 SUPERFAMILY RING/U-box 4 72 - -
Gma07g01829 335 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Gma07g01829 335 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Gma07g01829 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
Gma07g01829 335 PANTHER U BOX DOMAIN-CONTAINING 1 273 - -
Gma07g01829 335 PANTHER U BOX DOMAIN-CONTAINING 268 303 - -
Gma07g01829 335 Gene3D - 69 321 IPR011989 -
Gma07g01829 335 CDD RING-Ubox_PUB 9 50 IPR045210 -
Gma07g01829 335 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 273 - -
Gma07g01829 335 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 268 303 - -
Gma07g01829 335 SUPERFAMILY ARM repeat 86 321 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01829 Gma-Chr7 39467077 39470992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01829 1 308 U-box Gene Family AT4G21350 59.006 8.60e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01829 - - gmx:100785141 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01829 07 39467077 39470992 Gma08g00581 08 4800288 4802901 GST