Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01779 ATGGATAACAGCCTGAACAATCCGAGCGACAACGGGGAAGACCCGCCACCGCCGCCGCCGGTTCCCATGCAAGTCGACGGCTTCCAACCGTTCCATTACGCCAATTGTTCCGATGAAGGGGAAGAAGCCGTTCCGGTCACCAATGCTTCTTCTGCTATGCACGCCAGAGCCAGCGAACTCACCATTTCCTTCGAAGGCGAAGTCTATGTTTTCCCAGCAGTTACGCCGGAAAAGGTGCAGGCCGTATTATTACTCTTGGGAGCGCAGGAAATGACAAATAGTGCCCCCACCTCTGACATTTTGCTGCAGCAAAACTATCAGGACATTAGGGAAATAAATGATCCTTCCCGAAGTTCAAAGCTTTCACGAAGATTTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGGTATTCTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCAATGAAGGAAGACTACAAATCTCCTGCTGAAAATTGGGATTCAAGCAATGGTACTCCTTGCCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGCAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTTAACAACAGAAGCCGAACATTCTTTTGCTAAGCAGGACAAGGAGGGAAGCCCTGAAGAAACTAAGCCTGTGCAAATGGATTCCAGTCGGTCACCTGAGAAGACAAATGACCAGTTTATTATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCATGCTCTTAGTCTACATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCCGGGACCGAATTTGAGATTCCTGCAGGTTTTGATGATCAGGTTGACATTGATGATTCCAACATGAGGACTTACTGGCTGTGA 1068 0.4682 MDNSLNNPSDNGEDPPPPPPVPMQVDGFQPFHYANCSDEGEEAVPVTNASSAMHARASELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMTNSAPTSDILLQQNYQDIREINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASMKEDYKSPAENWDSSNGTPCPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAARIAFEQNELDTSADIKPLTTEAEHSFAKQDKEGSPEETKPVQMDSSRSPEKTNDQFIIGTAESVTDNLSIQVENHALSLHEQDTLEDLADASGTEFEIPAGFDDQVDIDDSNMRTYWL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01779 355 SMART GATA_3 187 240 IPR000679 GO:0006355|GO:0043565
Gma07g01779 355 ProSiteProfiles CCT domain profile. 124 166 IPR010402 GO:0005515
Gma07g01779 355 Pfam CCT motif 124 165 IPR010402 GO:0005515
Gma07g01779 355 ProSiteProfiles Tify domain profile. 53 88 IPR010399 -
Gma07g01779 355 MobiDBLite consensus disorder prediction 259 275 - -
Gma07g01779 355 Gene3D - 186 245 IPR013088 GO:0006355|GO:0008270
Gma07g01779 355 MobiDBLite consensus disorder prediction 171 190 - -
Gma07g01779 355 ProSiteProfiles GATA-type zinc finger domain profile. 187 244 IPR000679 GO:0006355|GO:0043565
Gma07g01779 355 MobiDBLite consensus disorder prediction 11 25 - -
Gma07g01779 355 Pfam GATA zinc finger 193 229 IPR000679 GO:0006355|GO:0043565
Gma07g01779 355 MobiDBLite consensus disorder prediction 1 27 - -
Gma07g01779 355 SMART tify_2 53 88 IPR010399 -
Gma07g01779 355 ProSitePatterns GATA-type zinc finger domain. 193 220 IPR000679 GO:0006355|GO:0043565
Gma07g01779 355 PANTHER GATA TRANSCRIPTION FACTOR 28 37 346 IPR045280 GO:0006355
Gma07g01779 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 241 - -
Gma07g01779 355 Pfam tify domain 56 87 IPR010399 -
Gma07g01779 355 CDD ZnF_GATA 192 235 IPR000679 GO:0006355|GO:0043565
Gma07g01779 355 MobiDBLite consensus disorder prediction 259 289 - -
Gma07g01779 355 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 37 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01779 Gma-Chr7 38918175 38924110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01779 30 237 Tify Gene Family AT1G51600 52.294 7.54e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma07g01779 CCT 6.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01779 - - gmx:102669848 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01779 07 38918175 38924110 Gma08g00632 08 5261989 5268322 GST