LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma07g01769	ATGTTGATCCTTCATTTTTGTTCTTTTCATTCTTACTTTCTCTCTCTCGCTTTTCTTGCTCTCTCTCCCTCTGGCAGCGGAGGACGGCTGGGTCTGGATGTGGAGGCCCTAGACGGCGTTGACAAGGAGGAGGGCGTCGTCGCAAAGGGCAGGAATGAAGGCTTGCGGATGACCTTTTTCGTCTTAGAACAACTGCTTTATCTTCAAGTTTTCCATTTTCTGGTACCCAAGAAGGACTCGTTGGTCTCAAATTCTTGTCCAAGAGACCTATTTCTTTTGCTATTTCGGGAATATAAACTCTGGGAGATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCGAGGcaagtgactttctccaagagaaggaaagggcttttcaagaaggctcaggagttgtcaaccctttgtgatgcagaCATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGCATGCATCAAGTAATTGAAAGGCACGATCGCTATTCAGCAATCCATAGATTGGATCGCCCCTCTATTGAGCTGCAGATTGAGAGTGACTCCAACAACATTCTGCGCAAGAAAGTAGAAGATAAGACTCGTGAACTGAGGCAGATGAATGGGGAAGATCTGCAAGGATTGACATTACAAGAACTGCAGAAACTAGAGGAACATCTTAAAAGAAGTTTGACCAATGTTTCAAAAGTAAAGGATGCAAAATTTATGCAAGAGATCAGCACCTTTAAGAGAAAGGGAGTGGAACTAATGGAGGAAAACCAAAGACTGAAACAGGTGCCGAGCCTTATCCATGCACATAGCTATAGGCAATCATCGGAATCCATTCTTAGCAATTCATCTAACCTTCCTGAAGATGGTGGTAGCAACACATCTCTCAAGTTGGGGTTACCTTAA	927	0.3991	MLILHFCSFHSYFLSLAFLALSPSGSGGRLGLDVEALDGVDKEEGVVAKGRNEGLRMTFFVLEQLLYLQVFHFLVPKKDSLVSNSCPRDLFLLLFREYKLWEMTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMHQVIERHDRYSAIHRLDRPSIELQIESDSNNILRKKVEDKTRELRQMNGEDLQGLTLQELQKLEEHLKRSLTNVSKVKDAKFMQEISTFKRKGVELMEENQRLKQVPSLIHAHSYRQSSESILSNSSNLPEDGGSNTSLKLGLP	308

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma07g01769	308	ProSiteProfiles	K-box domain profile.	187	279	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma07g01769	308	Coils	Coil	194	214	-	-
	Gma07g01769	308	SUPERFAMILY	SRF-like	104	182	IPR036879	GO:0003677\|GO:0046983
	Gma07g01769	308	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	112	159	IPR002100	GO:0003677\|GO:0046983
	Gma07g01769	308	Pfam	K-box region	196	269	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma07g01769	308	CDD	MADS_MEF2_like	105	179	IPR033896	GO:0000977\|GO:0045944
	Gma07g01769	308	PANTHER	-	102	292	-	-
	Gma07g01769	308	MobiDBLite	consensus disorder prediction	285	308	-	-
	Gma07g01769	308	Coils	Coil	224	244	-	-
	Gma07g01769	308	ProSitePatterns	MADS-box domain signature.	105	159	IPR002100	GO:0003677\|GO:0046983
	Gma07g01769	308	PRINTS	MADS domain signature	105	125	IPR002100	GO:0003677\|GO:0046983
	Gma07g01769	308	PRINTS	MADS domain signature	140	161	IPR002100	GO:0003677\|GO:0046983
	Gma07g01769	308	PRINTS	MADS domain signature	125	140	IPR002100	GO:0003677\|GO:0046983
	Gma07g01769	308	MobiDBLite	consensus disorder prediction	285	299	-	-
	Gma07g01769	308	ProSiteProfiles	MADS-box domain profile.	103	163	IPR002100	GO:0003677\|GO:0046983
	Gma07g01769	308	SMART	madsneu2	103	162	IPR002100	GO:0003677\|GO:0046983
	Gma07g01769	308	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	102	292	-	-
	Gma07g01769	308	Gene3D	-	115	183	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma07g01769	Gma-Chr7	38837243	38854177	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma07g01769	103	308	MADS-box Gene Family	AT2G22540	49.789	5.61e-67	207

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Gma07g01769		K-box	6.5e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma07g01769	-		-	gmx:100812951	378.637

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma07g01769	07	38837243	38854177	Gma08g00642	08	5331928	5342841	GST