Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01671 ATGATTGGAGGCAAAGATCTTGTTCCCAATGGCGTTGGCTCCGAGGGTGAGAACTCAAGGAGCAAGGTGCAACAACATCAGCATCATGATTTTGCTCATGCTAACAAGGAACACCCTCAAGAGAAAAAACCAAGTTTTGACGAGTTTCAGTCAACACCCTCAAAGGTTTCCATTTCTGGGTTGCAAGAGTTGACCCTCAGCTACCTCTGTGAGAACCCAAAATTGGGTTTTGTTGAGAGAGAGGTTGGTGATAGAAGCTCGGTGAAGGGCAAAGAAGTTGTTGTTTATGGGAATTCTGATCAGGATGAGAAATGCCTAACTGGGTTGGGTATGCCTATCTGGCGTGACGAATTAAGGTTAAAATCGTCGATGGTAGAGGTGTCCACATTTAGTGCGCAACAGTACCTTGAACAAGATTGTCTTCGAAGGAAGATATCCATCGGAAAGCAAAAGCAAGATCAAGATGAGAAATGGGTAGAGAGGGATTTCTTGAGTTTGAGTGAGACTAGGGAGGCTTCTTCAAATAGATCCATTGAGGAAGAGTGTGAGAGGGAGAAGAATGATGGCAGCAAGAAGCAGAAGCTTGAGACTCTTAGCCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCCTCAAACGCTTTGCAAAATGGCGACCAACTCGTTAGGCCAAAGCCTTGTAAGCCATCCACAAGGACCACAACTACGATAAATTCGTGTTCAAATGATTACACAGCAGCTTCTGTGTCTCACTCTTACTCTCACCCTTTCTCACACAACCAAAGTTGCTCACTCACCCGAAATTCAACCGAGAATTTTGAGTATTCACACAGCAAAGATGATCAAATTTGGCATTGTGGAGAGGGGACTAATGGCTCGGTTCATAGCAGGTTCAAGCCAATTGGAGATGGGGTTGCTTTGGCCAATTATTCCTTCATGCAAGGGAATAGTCAGTATAAGGCTACTAGTTCAGATAACCAATCTTTTTTCCCTTCAGAATTGCCTGCAAGAGTGAGATTTGAAGGTCAGTCAGAATGCTCAAGAGGAAACAATTCTGGGGATTTAAGAGGCTTGGAAGGTGTGAATGGTGGGAAAATGCAGTTTTCTACATCAGAGAGAGTTCTAAGAGACATTGTGTCTGAGTCTATCCCAGCCATGGCATTGACATTTCAGGAGTTCACTGAAGAAGTCATAACTTCAATTAAGGAACACTTGAAAGGTCTCATTGAAATGCCAGAGAAGAAAGGGGAATTAGAGAGCCTCCAGAACCAGCTAGGCCGAAGATCTGACCTCACCAGAGAGACTCTTTCAAACTCTCATAAGCAGCAGCTAGAGATTTTGGCTTCCATCAAGATGGGGCTTGGAAGTTTCTTGTCCGGTCAGTTCCAATTCATGGAGATGGTGGATGTTTTCTTGTACATGAGATGTAGAAATGTGAACTGCAAGAGCTTACTTCCTGTTGATGACTGTGACTGCAAGATCTGTTCAGGGAATAAGGGTTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAGCTTTGATTGTGCAAGTAACACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCTCACTGGTGTCATGCTGCCTGTGCCATTCAGAGGAATCTAATCAAACCTGGTCCTAGTTTGAAGGGTCCTTCTGGAACCTCTGAGGTGCAGTTTCATTGCATTGGCTGTGGACATGCTTCAGAAATGTATGGCTTTGTCAAAGATGTCTTTGTGTGTTGTGGCAAGGATTGGGGGCTAGAAACCTTGGCAAAAGAGCTTGACTGTGTGAGGAGGATTTTCCAGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATATTAAAACGGAAAATATGCTGTTAAAGCTTCATGCTAAACTGGTTTCTCCTTTGGATGCCTGCAACCACATCATACAGTTTTTCAACTATACGGATGGCATGTCTGAATTTCCTCCTTCTGTATCCTCAAAGGATTTGTCTACATCTAAGGCTAACCTAACAATGGACACAACATCGTCTCTTCCACAATCTACTTCTCTAATGCCAATATACACTTTTGACATGAGCTACACTAGGTCAAATGATGTTCAACAAAAAGACCTCAAATCCTCCCTCTTAAGTGAACAAAAAAAAGAGACTGATTTCCACTTGGAGCCTCTATTAGGGAAAGGAGAAGGGCTCGAAAGCTTGGAGAGCATAGTGAGGATAAAAGAGGTCGAAGCCAGAATGTTCCAAAACAAGGCAGATGAGGCAAGGAGAGAGGCAGAGGGGTTCCAGAAGATGATCAAGACAAAGGCTGCACAGATGGAAGAAGAGTATGCAGAAAGGATTGGCAAGATTTGCTTGCATGAGGCAGAGGAAAAGTGGAAGAAGAAATTTGATGAACTCAATGTCTTGCAAAATTCCCACTATGATTACTTCAACATGAAAAACAGAATGCAAGATGAGATCCATGGATTGTTGAAGAGAATAGAAGCAACAAAGCAGCAACGGTCAAAGTATGGGGTTGGATTTTGGGGTGGGGGCATAGGTGTTGTAGGGAGCCAAGAGAGGGAGAAGAAGTTGGAGAAGTGA 2583 0.4371 MIGGKDLVPNGVGSEGENSRSKVQQHQHHDFAHANKEHPQEKKPSFDEFQSTPSKVSISGLQELTLSYLCENPKLGFVEREVGDRSSVKGKEVVVYGNSDQDEKCLTGLGMPIWRDELRLKSSMVEVSTFSAQQYLEQDCLRRKISIGKQKQDQDEKWVERDFLSLSETREASSNRSIEEECEREKNDGSKKQKLETLSLSLALPDVSLSLTASNALQNGDQLVRPKPCKPSTRTTTTINSCSNDYTAASVSHSYSHPFSHNQSCSLTRNSTENFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALANYSFMQGNSQYKATSSDNQSFFPSELPARVRFEGQSECSRGNNSGDLRGLEGVNGGKMQFSTSERVLRDIVSESIPAMALTFQEFTEEVITSIKEHLKGLIEMPEKKGELESLQNQLGRRSDLTRETLSNSHKQQLEILASIKMGLGSFLSGQFQFMEMVDVFLYMRCRNVNCKSLLPVDDCDCKICSGNKGFCSSCMCPVCMSFDCASNTCSWVGCDVCSHWCHAACAIQRNLIKPGPSLKGPSGTSEVQFHCIGCGHASEMYGFVKDVFVCCGKDWGLETLAKELDCVRRIFQGSEDRKGKELHIKTENMLLKLHAKLVSPLDACNHIIQFFNYTDGMSEFPPSVSSKDLSTSKANLTMDTTSSLPQSTSLMPIYTFDMSYTRSNDVQQKDLKSSLLSEQKKETDFHLEPLLGKGEGLESLESIVRIKEVEARMFQNKADEARREAEGFQKMIKTKAAQMEEEYAERIGKICLHEAEEKWKKKFDELNVLQNSHYDYFNMKNRMQDEIHGLLKRIEATKQQRSKYGVGFWGGGIGVVGSQEREKKLEK 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01671 860 Pfam PHD - plant homeodomain finger protein 478 602 IPR032881 -
Gma07g01671 860 Coils Coil 813 833 - -
Gma07g01671 860 Pfam Coiled-coil region of Oberon 696 824 IPR032535 -
Gma07g01671 860 MobiDBLite consensus disorder prediction 21 45 - -
Gma07g01671 860 MobiDBLite consensus disorder prediction 1 52 - -
Gma07g01671 860 PANTHER PROTEIN OBERON 3 1 834 - -
Gma07g01671 860 Coils Coil 737 764 - -
Gma07g01671 860 MobiDBLite consensus disorder prediction 170 190 - -
Gma07g01671 860 CDD PHD_OBE1_like 508 567 - -
Gma07g01671 860 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 834 IPR004082 -
Gma07g01671 860 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 391 413 IPR004082 -
Gma07g01671 860 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 430 445 IPR004082 -
Gma07g01671 860 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 469 490 IPR004082 -
Gma07g01671 860 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 515 535 IPR004082 -
Gma07g01671 860 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 588 607 IPR004082 -
Gma07g01671 860 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 731 751 IPR004082 -
Gma07g01671 860 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 770 792 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01671 Gma-Chr7 34948765 34953643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01671 478 575 PHD Gene Family AT5G57380 27.551 4.02e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01671 - - gmx:100820248 1684.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01671 07 34948765 34953643 Gma20g00111 20 1104093 1108012 GST