Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01462 ATGGCCAACAAGGTTTGCACTATGAGAAATGTACTCGCACGATGGTACCGAGGTAATTGTCTCTTCTCTGGTGCGACTCTGCCTTCGTTTCCAACTCTGAACTCCTCCGATGCGGTGGGGATGGGTACCTACAAAGGAACTCCGATGCTCAAGTTAGAGCTCTGTCCCAAAAGTTGTAAACGAGACTTCTTGGATGCCTTCGAGGTCCACACCTGTCCAACGGGTGTTTGGCTTAGGCCGAGGGGTATTTGGCTAAAGCTGAAGGCACTCCACTTGGCTTTAATCCGTGTAACAATGTCTTCTCAAGGTTATGGCGTTCACTTTTTCAAGGTTATTCTTGAAAGCACCCTTCGAAAAGGACAACTGAAAGTGCCCTCAAGTTTTACCAGAAGACATTGGCAAGGAATTTCAAATCCTGTTATTCTAAGTCTTCCAAATGGCACCAAAAGGAAAGTTTATTGGCTGAAAGATGGTTGTGATGTTTGGTTTTCCAATGGTTGGAGAGAATTTGCAAAAAAATTGCGTTTGGATGTGTCACATTTTGTGGTGTTTCGATACGAAGGCAATTCTTGCTTTAACGTGATTATTTTTGGTAAAAGTGCTTTGGAAGTAGAGTACCCTTCAAGCCATGATTCTAATGTAGAAGTGGAAGAGATTAATGATACTGATTTTTCTGCGAAATTTGGTGAAGATCATACGAGTAAAAGTAGTAAGAAGAGAAAAATCATCCCCAAAGAAGAAGAAGATGATGATGATGATGAACCTAAGCATTGCAAGAAGGATAGTGGATTTGATTATTCTAAGCAAAAGAACGATGGTTGGTTTTATTTTCTCATTTTGTTCCGTAGTAGCCAAGGAGATTTCAAGAGGAGAATCAAAATGTTTCACGAGAAAGTGAAGGAAATGTTCTACGCTGAGAATGAACATTTCACATGTTTAATCCAAAAGACATACACGGAAAGAGATCTCTTGATCTTACCTATGGAATTTTCCAAACCATATCTGCACAAGGAAGGAAATGCTACGCTTTTTGTTGACGATGGCAGATCTTGGGATGTTGGGTTAAGGGTCAATCACTATGGACAATTGACATTTTCCAGAGGCTGGAGAAAATTTTCGTTAGAGAATAAATTGAAAGTAGGTGATGTTTGTGGTTTTGAGCTACACAATAGTGAAAAATTTTCATTCGAAGTTTCTATTTATCGTCTCGAAGAGAATTCTAGCACTCCCATCTTCAAAGGTAGTCATGAACAAAGACTTTCTAATATGCCTTCTTCATCCTTTAGAACTCCTGTGACCCCTAATGCTAGTACATCTAAGTCGAAGGATGATCTCTGCATCTTTATTAAGTCTTCAAATTTACCGTGCCAAACAATATCATTTAAATACATCAGGAGCTACGTTAACGAGAGTTGCAGTGAAATCCATGGAAGACTCGTGACCCTTCGTGTTGGGTGTAGAGCGTGGCAAGTGAAATTGCTCTGTTACAATGCAAATTCCTTTGCTAGATTCTCTAGTGGGTGGCCCGAATTTGCCAGGGAGTGTGACTTGAAACCGGGGGATGTCTGTATCCTTAAGATGATAGATGTGAAAAAACTAGTGTTCGAAGTTTCATGTTTGAAAGGAAAAATTTCTAGAGAAGAGAATGAAGTATATAAGTAG 1662 0.3989 MANKVCTMRNVLARWYRGNCLFSGATLPSFPTLNSSDAVGMGTYKGTPMLKLELCPKSCKRDFLDAFEVHTCPTGVWLRPRGIWLKLKALHLALIRVTMSSQGYGVHFFKVILESTLRKGQLKVPSSFTRRHWQGISNPVILSLPNGTKRKVYWLKDGCDVWFSNGWREFAKKLRLDVSHFVVFRYEGNSCFNVIIFGKSALEVEYPSSHDSNVEVEEINDTDFSAKFGEDHTSKSSKKRKIIPKEEEDDDDDEPKHCKKDSGFDYSKQKNDGWFYFLILFRSSQGDFKRRIKMFHEKVKEMFYAENEHFTCLIQKTYTERDLLILPMEFSKPYLHKEGNATLFVDDGRSWDVGLRVNHYGQLTFSRGWRKFSLENKLKVGDVCGFELHNSEKFSFEVSIYRLEENSSTPIFKGSHEQRLSNMPSSSFRTPVTPNASTSKSKDDLCIFIKSSNLPCQTISFKYIRSYVNESCSEIHGRLVTLRVGCRAWQVKLLCYNANSFARFSSGWPEFARECDLKPGDVCILKMIDVKKLVFEVSCLKGKISREENEVYK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01462 553 MobiDBLite consensus disorder prediction 227 264 - -
Gma07g01462 553 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 456 539 - -
Gma07g01462 553 MobiDBLite consensus disorder prediction 414 440 - -
Gma07g01462 553 CDD B3_DNA 107 197 IPR003340 GO:0003677
Gma07g01462 553 CDD B3_DNA 458 541 IPR003340 GO:0003677
Gma07g01462 553 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 105 403 - -
Gma07g01462 553 ProSiteProfiles B3 DNA-binding domain profile. 487 543 IPR003340 GO:0003677
Gma07g01462 553 SUPERFAMILY DNA-binding pseudobarrel domain 107 207 IPR015300 -
Gma07g01462 553 SMART B3_2 314 404 IPR003340 GO:0003677
Gma07g01462 553 SMART B3_2 445 543 IPR003340 GO:0003677
Gma07g01462 553 SMART B3_2 108 200 IPR003340 GO:0003677
Gma07g01462 553 Gene3D - 424 542 IPR015300 -
Gma07g01462 553 Gene3D - 291 406 IPR015300 -
Gma07g01462 553 Pfam B3 DNA binding domain 108 197 IPR003340 GO:0003677
Gma07g01462 553 Pfam B3 DNA binding domain 310 402 IPR003340 GO:0003677
Gma07g01462 553 CDD B3_DNA 313 402 IPR003340 GO:0003677
Gma07g01462 553 Gene3D - 102 201 IPR015300 -
Gma07g01462 553 PANTHER B3 DOMAIN-CONTAINING 456 539 - -
Gma07g01462 553 PANTHER B3 DOMAIN-CONTAINING 105 403 - -
Gma07g01462 553 SUPERFAMILY DNA-binding pseudobarrel domain 306 402 IPR015300 -
Gma07g01462 553 ProSiteProfiles B3 DNA-binding domain profile. 107 200 IPR003340 GO:0003677
Gma07g01462 553 ProSiteProfiles B3 DNA-binding domain profile. 309 404 IPR003340 GO:0003677
Gma07g01462 553 SUPERFAMILY DNA-binding pseudobarrel domain 457 541 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01462 Gma-Chr7 19744988 19750796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01462 108 405 B3 DNA Binding Superfamily AT3G18990 25.148 2.12e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma07g01462 B3 8.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01462 - - vra:106753565 407.142