Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01345 ATGCAGGAGCTTAGGAGGGTCAGGTCTGGGATCATGGGGGAGAAGGATATCATGGTCACCATACATGATCATGGGGGAGCTCAGTGGGTTTATGATAATTATAGGGATGAGACTTATTTGAGGAGGGTTGTTATGCCCTTGGAGATTCTTCTTACTAACTATAAGAGGTTTTTTGTCAAGAATTCTGGTGTCAATGCTATTTGTTATGGTGCTAAGTTCATGAATCAAATTAAATTTTGA 240 0.4 MQELRRVRSGIMGEKDIMVTIHDHGGAQWVYDNYRDETYLRRVVMPLEILLTNYKRFFVKNSGVNAICYGAKFMNQIKF 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01345 79 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 1 74 IPR004802 GO:0006396
Gma07g01345 79 Pfam tRNA pseudouridylate synthase B C-terminal domain 1 51 IPR032819 -
Gma07g01345 79 Gene3D PUA domain 47 75 IPR036974 GO:0003723
Gma07g01345 79 Gene3D Pseudouridine synthase 1 46 - -
Gma07g01345 79 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT DKC1 1 74 - -
Gma07g01345 79 SUPERFAMILY Pseudouridine synthase 1 52 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01345 Gma-Chr7 17822132 17822371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01345 1 74 NAC Transcription Factor Family AT3G57150 72.973 3.61e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01345 K11131 - gmx:100806355 129.028