Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01308 ATGTCCACTTTGCAGATGTCCCGTGTTGATTTGGAGCAAGGGAATGTGAATCATCGCCATTCGGTTGTTGGAAGTGATGTGAGTGGTGAAGGGAGCGTATGCTTCTCTGATGCTGATGATGGTTCTTGCTATTCCCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGTTGGGGGTGTTCCTCATTCTGGGAGAGCTTCTTCTTCGGCTTCTGAGTGTTCTGTGGAGGCGGAAACTAGAAGTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGTCATGAGTCTGGTGCCCCCATTCAATTGGGATGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACATGTGAAATTTGCCATTCTGTTGCTCGGAATGTTTACGGAGGAAATGAGGAGTCGACGGAGCATTTGAGCGACGTTAACAATGCTACTACAGCAGCCACACTCTCCACACCTGCTCCTTCAGCAGAACCTCGAAGATTTTGGCACGGCCATCGCTTCCTGAATTTCTTGCTTGCTTGTATGGTTTTTGCGTTTGTCATATCATGGCTATTCCACTTTAATGTGCCATCATCCTAG 699 0.4678 MSTLQMSRVDLEQGNVNHRHSVVGSDVSGEGSVCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEVGGVPHSGRASSSASECSVEAETRSGVPEIKVHLAKVEKDCRICHMGLESDSHESGAPIQLGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGGNEESTEHLSDVNNATTAATLSTPAPSAEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01308 232 CDD RING_CH-C4HC3_MARCH 108 160 - -
Gma07g01308 232 ProSiteProfiles Zinc finger RING-CH-type profile. 100 166 IPR011016 GO:0008270
Gma07g01308 232 PANTHER OS01G0850200 PROTEIN 5 231 - -
Gma07g01308 232 PANTHER ZINC FINGER, RING-CH-TYPE 5 231 - -
Gma07g01308 232 Pfam RING-variant domain 108 159 IPR011016 GO:0008270
Gma07g01308 232 SMART ringv_2 107 160 IPR011016 GO:0008270
Gma07g01308 232 SUPERFAMILY RING/U-box 105 163 - -
Gma07g01308 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 168 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01308 Gma-Chr7 17229101 17233526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01308 79 232 C3H Transcription Factor Family AT5G05830 63.226 3.00e-67 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01308 - - gmx:100808666 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01308 07 17229101 17233526 Gma11g02278 11 38165906 38167199 ECH
Gma07g01308 07 17229101 17233526 Gma02g02389 02 49959951 49965007 ECH
Gma07g01308 07 17229101 17233526 Gma14g00537 14 5155896 5160740 ECH
Gma07g01308 07 17229101 17233526 Gma07g01308 07 17229101 17233526 ECH
Gma18g01777 18 49518290 49520867 Gma07g01308 07 17229101 17233526 GST