Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01252 ATGGCATCACTGGGATCTCCGTCTTCTTTCTGGTGCTACCGCTGCAACCGCATAGTTAGGGTTCCACAAAACCACGCCGTTCTCCTCTGCCCCGATTGCAACTCCGGCTTCCTCGAAGAGCTCCAAACCCCTCCCCACTCGCGCCGATCCACGCGCGGCGGCGGTGGGTCCCCCTTCAACCCGGTAATCGTCCTGCGCAACGCAAACGACGTCGTCTCGCCCGAAACGCGGAACTTCGAACTCTACTACAACGACGCCGTTTCAGGTTCCTCCGGCCCAAGCAGTCTCCGTCCTTTACCACAGGGAGTATCCGAGTTCCTCATGGGCTCCGGCTTCGACAATGTACTCGACCAGCTCGACGCCGCCGCGGGGGGCGCCGGAGCACTGCCCCCCACGGCAGCGTCGAAAGCGGCGATCGAGTCGATGCCGGTGGTTAAGATCCTCGCGAGCCACACCTACGCGGAATCGCACTGCGCGGTCTGCATGGAGAATTTCGAGATCAACTGCGACGCACGTGAGATGCCGTGCGGTCACGTGTACCATTCCGAGTGCATCGTGCCGTGGCTCTCGGTGAGAAACTCGTGCCCCGTGTGCCGCCACGAGGTTCCTTCGGATGAAGTTGAAGAAAGTAATAACAATACTGTGGGGTTGACTATTTGGAGACTTCCTGGGGGAGGATTCGCTGTGGGCAGGTTCATCGGAGGGAGGGAGCTCCCACTGGTGTATACGGAGATGGACGGCGGGTTTAACGGCGCTAACGGCGTTCCAAGGAGAGTCGCTTGGGATAGCTCCGTTGGGAGGTCTAGGGAGAATAGAGGCTTCGGTGCTGCTTTCAGGAATGTTTTTTCGTATATCGGGAGGGTTAGGAGCTCGTTTTCTCGCCGAACGAGAAATTCGCGTGCCAACGGAAGATCTCGTTCTTAA 924 0.5877 MASLGSPSSFWCYRCNRIVRVPQNHAVLLCPDCNSGFLEELQTPPHSRRSTRGGGGSPFNPVIVLRNANDVVSPETRNFELYYNDAVSGSSGPSSLRPLPQGVSEFLMGSGFDNVLDQLDAAAGGAGALPPTAASKAAIESMPVVKILASHTYAESHCAVCMENFEINCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHEVPSDEVEESNNNTVGLTIWRLPGGGFAVGRFIGGRELPLVYTEMDGGFNGANGVPRRVAWDSSVGRSRENRGFGAAFRNVFSYIGRVRSSFSRRTRNSRANGRSRS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01252 307 Pfam Protein of unknown function (DUF1117) 215 302 IPR010543 -
Gma07g01252 307 ProSiteProfiles Zinc finger RING-type profile. 158 199 IPR001841 -
Gma07g01252 307 Pfam zinc-ribbon 9 41 IPR039525 GO:0061630
Gma07g01252 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 270 - -
Gma07g01252 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RDUF2 8 270 - -
Gma07g01252 307 SUPERFAMILY RING/U-box 138 205 - -
Gma07g01252 307 Pfam Ring finger domain 157 199 IPR001841 -
Gma07g01252 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 205 IPR013083 -
Gma07g01252 307 SMART ring_2 158 198 IPR001841 -
Gma07g01252 307 CDD RING-H2_PA-TM-RING 157 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01252 Gma-Chr7 16295225 16296148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01252 98 215 C3H Transcription Factor Family AT5G01980 39.167 1.14e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01252 - K11982 gmx:100798563 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01252 07 16295225 16296148 Gma18g00348 18 2931111 2932612 ECH
Gma07g01252 07 16295225 16296148 Gma11g02228 11 37612954 37614726 ECH
Gma07g01252 07 16295225 16296148 Gma02g02352 02 49613810 49614985 ECH
Gma07g01252 07 16295225 16296148 Gma14g00579 14 5573372 5574655 ECH
Gma07g01252 07 16295225 16296148 Gma07g01252 07 16295225 16296148 ECH
Gma18g01687 18 47332210 47333637 Gma07g01252 07 16295225 16296148 GST