Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01022 ATGGGTGAGAAAGATGATGGCTTGGGTTTGGGGTTGAGTTTGAAGTTAGGATGGGGAGAAAATAATGATAACAATAATAATCAACAACAACACCCTTTCAACGTGCACAAGCCTCCTCAATCGGTTCCAAACCAAAGGGTTTCCGTCAATAGCTTGTTCCATTTTCATGATCGGAGCTCCGAGATGCGGTCGTTCTTCCGCGGAATAGACGTGAATTTGCCACCGCCCCCGCCTTCGGCGGCTCTGGCGGCGTTCGATGACGAGAACGGGGTGTCCTCGCCGAACAGCACGATATCGAGCATCAGCGGGAAGCGGAGCGAGAGAGAGGGAAACGGAGAGGAGAACGAGAGAACGTCGAGTTCTCGCGGCGGCGGCGGAAGCGACGACGATGAAGGCGGCGCGTGTGGTGGAGACGCCGACGCCGATGCGTCGAGGAAGAAGCTGAGGTTGTCTAAGGAACAGGCCTTGGTGCTGGAAGAAACATTCAAGGAACACAATACTCTGAACCCGAAGCAAAAGCAAGCTTTGGCAAAGCAGTTGAATTTGATGCCTAGGCAGGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAATTGAAGCAGACTGAAGTGGATTGTGAATATTTGAAGAGGTGCTGTGAGAATCTAACTGAAGAGAATAGGAGGCTTCAAAAGGAAGTGCAAGAGCTCAGGGCATTGAAGTTATCCCCACAGCTTTACATGCAAATGAACCCTCCCACCACTCTCACAATGTGCCCTTCATGTGAGCGTGTTGCTGTCTCATCCGCATCCTCTTCCTCATCGGCCACCATGCCCTCTGCCCTGCCTCCAGCTAATCTCAACCCGGTGGGCCCTACCATCCAGCGGCCAATGCCCGTCAACCCTTGGGCAGCAATGTTGAATCAGCACCGTGGCCGGCCATAA 927 0.5286 MGEKDDGLGLGLSLKLGWGENNDNNNNQQQHPFNVHKPPQSVPNQRVSVNSLFHFHDRSSEMRSFFRGIDVNLPPPPPSAALAAFDDENGVSSPNSTISSISGKRSEREGNGEENERTSSSRGGGGSDDDEGGACGGDADADASRKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSSATMPSALPPANLNPVGPTIQRPMPVNPWAAMLNQHRGRP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01022 308 PANTHER - 5 302 - -
Gma07g01022 308 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Gma07g01022 308 Coils Coil 207 237 - -
Gma07g01022 308 CDD homeodomain 145 202 IPR001356 GO:0003677
Gma07g01022 308 SMART HOX_1 143 205 IPR001356 GO:0003677
Gma07g01022 308 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Gma07g01022 308 MobiDBLite consensus disorder prediction 18 44 - -
Gma07g01022 308 MobiDBLite consensus disorder prediction 267 288 - -
Gma07g01022 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 5 302 - -
Gma07g01022 308 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Gma07g01022 308 MobiDBLite consensus disorder prediction 78 141 - -
Gma07g01022 308 SUPERFAMILY Homeodomain-like 131 202 IPR009057 -
Gma07g01022 308 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Gma07g01022 308 Pfam HD-ZIP protein N terminus 1 109 IPR006712 GO:0005634
Gma07g01022 308 Gene3D - 149 199 - -
Gma07g01022 308 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Gma07g01022 308 MobiDBLite consensus disorder prediction 1 44 - -
Gma07g01022 308 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01022 Gma-Chr7 11985920 11989531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01022 39 300 Homeobox Transcription Factor Family AT3G60390 62.409 3.88e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma07g01022 HD-ZIP_N 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01022 K09338 - gmx:100810641 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01022 07 11985920 11989531 Gma07g01022 07 11985920 11989531 ECH
Gma03g01077 03 35497912 35500847 Gma07g01022 07 11985920 11989531 GST
Gma07g01022 07 11985920 11989531 Gma18g02327 18 57087634 57091355 PCT
Gma07g01022 07 11985920 11989531 Gma09g02214 09 47670481 47673994 PCT