Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01006 ATGCACGGGAAAAAGGAGCAAGAAGAATACATAAGGAAAGGACCATGGAAAGCAGAAGAAGATGAGATGCTACTGAAGCATGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGGACTGGCAAGTCGTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTTTCACTTGAGGAAGAGAGGGTTGTAATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCTAAGATTGCATCCTATTTGCCAGGGAGAACAGACAATGATGTCAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTGCAAACATCAGCAACTCCTAAATCGCAGAAAAATAAAACTAGAGTTCCTTCCCTTCATGATGTTCCAATTTTGCAGCCTCCTAAGTTCAGTTCACCATCAGAGGGAGAACCATCATCAAAGCCTCAGTCATGCTCACTGCCCTACATTGATAATTCTGAGGTTATCAAAATGGTGTCTTTGCCAGATCTCATAAAGTCTGAGTTGCCTAGTTCTGACACAATCCATGTTGAACAAGAGTTTACCCTTTTTGAGAACTACAAAAGCACTGAACAGATTGCATTTCCTCAGATTCCAGAACTCCAAAATGGCCTCACATTCTCAATGGAAAACCAAGATCTCTTGCCCACAATTGATGAGCCATGTTTCATTGAAGAATTGTGTCCTCTTGATGCATCTGAGTTTGGAATAGGTCCACAACACCCCATTGGGTTCCCTTTCTTTCAGCCACCAGGAAGTTGCAGATTAGGAACAGGGGATGCAATTGATAACTCCAAAATCAGTGACAGCTTCTTCGATGATTTCCCTGTGGACATGTTTGATCACATGGACCCACCTGCAAGCCCTTCAAACCTCTGA 933 0.4352 MHGKKEQEEYIRKGPWKAEEDEMLLKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNRWAKIASYLPGRTDNDVKNFWSSRQKRLARILQTSATPKSQKNKTRVPSLHDVPILQPPKFSSPSEGEPSSKPQSCSLPYIDNSEVIKMVSLPDLIKSELPSSDTIHVEQEFTLFENYKSTEQIAFPQIPELQNGLTFSMENQDLLPTIDEPCFIEELCPLDASEFGIGPQHPIGFPFFQPPGSCRLGTGDAIDNSKISDSFFDDFPVDMFDHMDPPASPSNL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01006 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Gma07g01006 310 MobiDBLite consensus disorder prediction 150 165 - -
Gma07g01006 310 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Gma07g01006 310 MobiDBLite consensus disorder prediction 121 165 - -
Gma07g01006 310 Pfam Myb-like DNA-binding domain 16 75 - -
Gma07g01006 310 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gma07g01006 310 CDD SANT 69 108 IPR001005 -
Gma07g01006 310 CDD SANT 15 60 IPR001005 -
Gma07g01006 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Gma07g01006 310 PANTHER TRANSCRIPTION FACTOR DUO1 1 309 - -
Gma07g01006 310 PANTHER TRANSCRIPTION FACTOR DUO1 1 309 - -
Gma07g01006 310 Gene3D - 13 65 - -
Gma07g01006 310 SMART sant 12 62 IPR001005 -
Gma07g01006 310 SMART sant 66 114 IPR001005 -
Gma07g01006 310 Gene3D - 68 137 - -
Gma07g01006 310 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01006 Gma-Chr7 11668020 11670033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g01006 1 307 MYB Transcription Factor Family AT3G60460 49.375 3.17e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma07g01006 Myb_DNA-bind_6 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01006 K09422 - gmx:100818656 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01006 07 11668020 11670033 Gma07g01006 07 11668020 11670033 ECH
Gma03g01088 03 35699836 35701902 Gma07g01006 07 11668020 11670033 GST