LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma07g00905	ATGGGCATCAAGGATCTTCTGAGGTTCATGAAACCTTACATTGAACCTGTCCACATCAAGAAGTACGCTGGAAAACGCGTGGGTATTGATGCGTATTCATGGCTTCACAAAGGGGCTTATTCGTGTAGTATGGAGCTTTGTCTGGATTCTAATAGTGAAAGGAAGTTGCGGTACATTGACTATTTTATGCATAGAGTGAACTTGCTTCGCTTCTATAAAATAACTCCAGTTGTTGTTTTTGATGGTTGCAATGTTCCTTGCAAGGCCGCAACTGAGGAAGAGAGAAACAGGAAAAGAAGGGCTAATCGTGAATTGGCAATGGCGAAGCTCAAAGAAGGGAATGTTGGTGCAGCTTCAGAGCTCTTCCAGAGAGCAGTGAGTATTACTCCCGTTATGGCACATAAGCTAATTCAGACCCTAAAATCAGAGAAGATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCGTACATGTCTCAGCTTGGAGTAGAAAATGGTGGAGTTGCAGCGGTGATCACAGAAGATAGTGATCTAATAGCATATGGCTGTCCAGCTATTATTTTTAAGATGGACCGTCATGGGAATGGTGAAAGAATTGAGTTAGAGAAAGTGTTTTCTGCTGAGTCTGGTAGACCTTCATTTCGGAGTTTCAATATGAAACTCCTCACAGGTATGTGCGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCTTTAGTTTCCAAGTATCGGAACCTAGATCGTATCTTGTCTGTTCTTAAGATCGAGAAAGGTGACCAAATGCCTGAAGATTATGCCAAATCCTTTCAAGAGGCTGTTGCGGTTTTTGAGCATGCTCAAATATATGATGTCAATTCTAAAGAGCTCAAGCACATGAATCCTCTTCCAGAAAATTTTCTTGGGTCACTTGATGGAAAATTTGATTTCTTGGGACCAGAAATTCCTCCATCAATAGTCACAGCAATAGCTGAAGGAAACTTGAATCCGTCAACTAAGAAAGCCTTTGATAAGTCTGAATGTTCTAGATTTCCTCTACAGCCCATTGATCTCCAAAGCATTGATCAAGTCCGGAAAGCTGAAGTTCCTGCACCATCTAGACAGGGGAGTAGCTTTTCAATCATCACCTCTCATTACACCAGAGAAATGGCAAGGCTTTCAGATAAAGATAAGTATTCCAATGAAGCATTAGCACTTCATAAACTAATCATGCCATTGGGAAATAATGGAACAGAGGAAAAGACTATTATATCTGATTTCACTCCTTTGAAGTTTCCTGACAACAATCCATTCAGGATAAGAAAAAATGAGGGAACATATCAGACAAAGGACACTGTACAAAAAGTTTCTTTTGCCAGCAACATGGGATATACCGACTTATGCATGTCTCCAGATGACTTTGAAGAAAAGGGGTCTGAGAATCTCTCAAGGAAAAGGAAATTTCAGAACTTTTGCTCAGATAAAGTTGAAGCCACTGATGAACTGTTTTCAGGAGTGACTGAAGTAGAAAAATCTGATATTCCATGCATGGCTGTGGAATCCCCCGAAAGTATAAATTCTGATCAGACTAAGAAAATTGCCGATTTGAAAGGAAGAAGTGAAAGTAATAAGCAATCCAAGAGAAGCAACAGCAAGAAAACGGGGAGTAACAACATAACTCTTTTGAGTTTCTTTTCTAGAGTGTAA	1719	0.4031	MGIKDLLRFMKPYIEPVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSNSERKLRYIDYFMHRVNLLRFYKITPVVVFDGCNVPCKAATEEERNRKRRANRELAMAKLKEGNVGAASELFQRAVSITPVMAHKLIQTLKSEKIEFVVAPYEADAQLAYMSQLGVENGGVAAVITEDSDLIAYGCPAIIFKMDRHGNGERIELEKVFSAESGRPSFRSFNMKLLTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKIEKGDQMPEDYAKSFQEAVAVFEHAQIYDVNSKELKHMNPLPENFLGSLDGKFDFLGPEIPPSIVTAIAEGNLNPSTKKAFDKSECSRFPLQPIDLQSIDQVRKAEVPAPSRQGSSFSIITSHYTREMARLSDKDKYSNEALALHKLIMPLGNNGTEEKTIISDFTPLKFPDNNPFRIRKNEGTYQTKDTVQKVSFASNMGYTDLCMSPDDFEEKGSENLSRKRKFQNFCSDKVEATDELFSGVTEVEKSDIPCMAVESPESINSDQTKKIADLKGRSESNKQSKRSNSKKTGSNNITLLSFFSRV	572

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma07g00905	572	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	220	349	IPR036279	-
	Gma07g00905	572	Gene3D	-	1	212	-	-
	Gma07g00905	572	CDD	PIN_EXO1	1	208	IPR044752	GO:0046872
	Gma07g00905	572	SMART	xpgn3	1	102	IPR006085	GO:0004518
	Gma07g00905	572	PANTHER	5'-3' EXONUCLEASE FAMILY PROTEIN	1	564	-	-
	Gma07g00905	572	SMART	xpgineu	141	213	IPR006086	GO:0004518
	Gma07g00905	572	CDD	H3TH_FEN1-like	228	295	-	-
	Gma07g00905	572	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	564	IPR006084	-
	Gma07g00905	572	Coils	Coil	91	111	-	-
	Gma07g00905	572	SUPERFAMILY	PIN domain-like	2	235	IPR029060	-
	Gma07g00905	572	Pfam	XPG N-terminal domain	1	100	IPR006085	GO:0004518
	Gma07g00905	572	Gene3D	-	218	291	-	-
	Gma07g00905	572	MobiDBLite	consensus disorder prediction	524	560	-	-
	Gma07g00905	572	Pfam	XPG I-region	144	235	IPR006086	GO:0004518
	Gma07g00905	572	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	140	157	IPR006084	-
	Gma07g00905	572	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	76	95	IPR006084	-
	Gma07g00905	572	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	24	38	IPR006084	-
	Gma07g00905	572	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	225	240	IPR006084	-
	Gma07g00905	572	MobiDBLite	consensus disorder prediction	534	552	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma07g00905	Gma-Chr7	9853258	9857710	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma07g00905	1	312	Core DNA Replication Machinery Family	AT5G26680	24.000	3.63e-12	66.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma07g00905	K10746		-	gmx:100817932	1120.53