Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00877 ATGCCTGTAGTGACAGAACACATGAAATGGAGAAGACCAAGAAACCAATTCAGGCACCCCATTTCAGAAACTGATGATCCAAACCCTCAAATCCCTTCCATAATCCAATCCTCTCACAGCAAATCCACCTTCTCCTCTCTCTTTTCTTCTTTCTCCACCTCCAATGAAACCAGAGACCAAAATAGAAACAACAACAACAAAAGCAACAGAAAATTCTCTGCAGCAACCTTCAGAGGCTTCGGCTGCACTGCCGGTGCATCGCAGAAGGTGTCGGTGCCGGTGCCTGCGGTGATTCGCTCCTCGGCGGATAGGGAAGGGAAGAGTAGCAGAAAAAAGAAGCACAGAAGGAACAGTAACAGTGGCAACAGCACAAGTGATGATGATGATGATGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAACTGATGCTGCTGCTGCATCTGTGGAATGTGTTGTGGCTAGGAAGAATGTGTCTGCAAGAGGAAAACTTGATGTGGTGGAGGACAGGCGTTCATCTTATTTTGGAAGGCGCACTGTAAAGCCAGAAAGCTTCTCCTTTCTGGAAGATGAACCTGACATTTTTGCAGCACGCCCTGGATTAGAGCCTTTTGGAACTGCTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAACTGGGTGAGAGAATCGGTTATGCCAACACTGGGCTCAAAGAAGATGAGATGGGACTCAACATAAGGAAAGTTAAGCCTTCAAGTTCAAATGATGCATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACAATGGCTTGTGCATAAAAATTTCTGCCCAGTTTCGAGGAGTCGGCAATATTATACTTGGTAG 1050 0.4505 MPVVTEHMKWRRPRNQFRHPISETDDPNPQIPSIIQSSHSKSTFSSLFSSFSTSNETRDQNRNNNNKSNRKFSAATFRGFGCTAGASQKVSVPVPAVIRSSADREGKSSRKKKHRRNSNSGNSTSDDDDDDVWCGPGIGFSTDAAAASVECVVARKNVSARGKLDVVEDRRSSYFGRRTVKPESFSFLEDEPDIFAARPGLEPFGTARFYRHVPHPSPDGLAEIMILQGRIMMGGRFDSHDQFRDWRLDVDNMSYEQLLELGERIGYANTGLKEDEMGLNIRKVKPSSSNDASKHQLDKKCSVCQEEYESDDELGRLKCDHSYHFQCIKQWLVHKNFCPVSRSRQYYTW 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00877 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 342 IPR045191 GO:0061630
Gma07g00877 349 MobiDBLite consensus disorder prediction 22 70 - -
Gma07g00877 349 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 3 342 - -
Gma07g00877 349 SMART ring_2 301 341 IPR001841 -
Gma07g00877 349 Pfam Ring finger domain 300 340 IPR001841 -
Gma07g00877 349 MobiDBLite consensus disorder prediction 7 21 - -
Gma07g00877 349 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
Gma07g00877 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 346 IPR013083 -
Gma07g00877 349 MobiDBLite consensus disorder prediction 1 70 - -
Gma07g00877 349 MobiDBLite consensus disorder prediction 95 132 - -
Gma07g00877 349 SUPERFAMILY RING/U-box 300 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00877 Gma-Chr7 9477839 9484656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00877 4 256 C3H Transcription Factor Family AT1G73760 37.413 2.00e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00877 - - gmx:100807785 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00877 07 9477839 9484656 Gma08g00474 08 3938955 3943497 ECH
Gma07g00877 07 9477839 9484656 Gma07g00877 07 9477839 9484656 ECH
Gma07g00877 07 9477839 9484656 Gma09g01673 09 42277459 42282981 GST