LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma07g00732	ATGGGTAGAGGGAGAGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTAACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTCATCATTTTCTCAAGCCGTGGCAAGCTCTATGAATTTGGAAGTGTTGGGACTACCAAAACTATTGAGCGATACCATCGTAGCTCTTTTACTCCTCAAGACGAACACGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTATCAAAGCTAAAGGCAAAGTATGATTCTCTTCAAAGGACCCAGAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAACATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGGGCTTTAGCACAAGCAAGGCAAAGGAAGACACAAATCATGATTGAACAAATGGAAGAGCTTCGCAGAAGGGAGCGCCATCTTGGAGACATGAATAAGCAACTGAGACTCAAGCTTGAAGCAGAGGGATTTAATCTTAAAGCTATGGAAAGCTTGTTGAGCTCTACTTCAGAAGCTGGAAATAGTGGCTTTCACTTTCAGCAGCCTCCTCAAACCAATCCTATGGATTACCAGCAGGCAGAACCCTTTTTGCAAATAGGGTACCATCAATATGTTCAAGCTGAGGCTTCTAATGTTCCAAAGAGCATGGCTTGTGAAACTAATTTCATGCAGGGATGGATCCTTTGA	738	0.4363	MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTKTIERYHRSSFTPQDEHVECETQSWYQEVSKLKAKYDSLQRTQRHLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLEAEGFNLKAMESLLSSTSEAGNSGFHFQQPPQTNPMDYQQAEPFLQIGYHQYVQAEASNVPKSMACETNFMQGWIL	245

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma07g00732	245	Coils	Coil	119	142	-	-
	Gma07g00732	245	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Gma07g00732	245	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Gma07g00732	245	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Gma07g00732	245	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983
	Gma07g00732	245	ProSiteProfiles	K-box domain profile.	85	175	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma07g00732	245	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Gma07g00732	245	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Gma07g00732	245	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 17	1	231	-	-
	Gma07g00732	245	Pfam	K-box region	84	169	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma07g00732	245	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Gma07g00732	245	Coils	Coil	148	168	-	-
	Gma07g00732	245	PANTHER	MADS BOX PROTEIN	1	231	-	-
	Gma07g00732	245	CDD	MADS_MEF2_like	2	73	IPR033896	GO:0000977\|GO:0045944
	Gma07g00732	245	Gene3D	-	13	82	IPR036879	GO:0003677\|GO:0046983
	Gma07g00732	245	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma07g00732	Gma-Chr7	7724465	7731274	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma07g00732	1	245	MADS-box Gene Family	AT2G45650	64.567	1.65e-105	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Gma07g00732		K-box	1.8e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma07g00732	K09264		-	gmx:100820061	490.345

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma07g00732	07	7724465	7731274	Gma07g00732	07	7724465	7731274	ECH
	Gma05g00480	05	4560012	4567301	Gma07g00732	07	7724465	7731274	ECH
	Gma17g01233	17	10881833	10890808	Gma07g00732	07	7724465	7731274	ECH