Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00727 ATGGTGAGGGGAAAGACTCAGATGAAGCGTATAGAGAATGCCACAAGCAGGCAAGTAACTTTCTCAAAGCGGCGAAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTAATCATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTGCTAGCTCCAGCATGCAGGAGTCAATTGAACGATACCGCAGGCATACCAAGCATGTTAATCCAACTACATTCAGATCAGTTGAACAAAATATGCAGCATCTGAAGCAAGAGGCAGAAAACATGATGAAGAAGATTGACCTTCTTGAAGCTGCAAAACGGAAGTTCTTGGGGGAAGGTTTGGGGGCTTGCTCCATTGAGGAACTGCAACGGATAGAACAACAGTTGGAGAGGAGTTTAAGTAATGTTAGAGCAAGAAAGgtccaggttttcaaggaacaaattgaacaactaaaagaaaagGAAAAAGCCCTACTAGAtgaaaatgccaagctcactgaaaatgccaggctctctgaGAAGCATGACATCCATCTACAGCCAGCAACAAAGAATCAGAATGTGAATCAACCCCAATGCAATGCAGAAAGTAGTTCAAGTTCAGATGTGGAGACCGAATTGTTCATTGGACTTCCTGATACAAGAGCAAGACACATCTCTCATCACGTCTAG 681 0.3891 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQESIERYRRHTKHVNPTTFRSVEQNMQHLKQEAENMMKKIDLLEAAKRKFLGEGLGACSIEELQRIEQQLERSLSNVRARKVQVFKEQIEQLKEKEKALLDENAKLTENARLSEKHDIHLQPATKNQNVNQPQCNAESSSSSDVETELFIGLPDTRARHISHHV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00727 226 MobiDBLite consensus disorder prediction 176 204 - -
Gma07g00727 226 Coils Coil 81 111 - -
Gma07g00727 226 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma07g00727 226 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Gma07g00727 226 ProSiteProfiles K-box domain profile. 88 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma07g00727 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma07g00727 226 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Gma07g00727 226 Coils Coil 122 142 - -
Gma07g00727 226 MobiDBLite consensus disorder prediction 184 204 - -
Gma07g00727 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma07g00727 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma07g00727 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma07g00727 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma07g00727 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma07g00727 226 Coils Coil 144 171 - -
Gma07g00727 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma07g00727 226 PANTHER MADS BOX PROTEIN 1 216 - -
Gma07g00727 226 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Gma07g00727 226 PANTHER MADS-BOX PROTEIN SOC1 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00727 Gma-Chr7 7664050 7682928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00727 1 159 MADS-box Gene Family AT2G45660 79.245 9.41e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma07g00727 K-box 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00727 - - gmx:100807963 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00727 07 7664050 7682928 Gma07g00727 07 7664050 7682928 ECH
Gma18g02074 18 54213739 54232056 Gma07g00727 07 7664050 7682928 PCT
Gma09g02436 09 49698801 49713886 Gma07g00727 07 7664050 7682928 PCT
Gma07g00727 07 7664050 7682928 Gma18g02074 18 54213739 54232056 PCT
Gma07g00727 07 7664050 7682928 Gma09g02436 09 49698801 49713886 PCT