Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00707 ATGGCTGGAGCTGAAGCTACAAAATATGCTTCTTCTGCTACAAGTCCAACAACCACTGCGGCAAACAACATGGCCACCAAATCGAACAAACCAACCATCAGAaggttcattggggtgaggcaaagaccctcaggaaggtgggtggctgagatcaaagactcttctcagcacgtgagattatggcttggaacctatgatactccagaagaggccgcaagggcttatgatgaagcagcacgagctctgagaggtgaaaatgctagaaccaacttTGCACCAGTGAGCCAAGTCATACTGGGTCAACAACAATCAGGCTCTAATAATAACCTTTCAACTGGGTCTGATATTGGGAAGCATGGTTTGAGCTTTGCTTCCTTGAAGGCCAAGTTGAGCAAGAATCTTCAGAACATTATGGCTAGGGCAAGTGATCACAATAACAACAACAAGTCCTCAAAGAGTAGGGTGAGTGACCACTTCACCTTTGCCAGCATCTTCCACCGTAGGAGCTACCAAATCCCTGAAGGGGACACGATGAAGAACATTGACAAAGTGGTGCAGCCTAGTATTATTGTGCCTCCTATGGAAGCTGGTGGTGTTGGTGACTATAATTCTTCTGTTGCTAATTGGGAAAGTGCTTCTAGTGTCTCTGATTGCAGCTCTGAATGGGTAGGATTCGGGAATTCGAAACTCGGGTTGGAGTCGGACGGGTATGAGATAGGGGAGGCTAGTGTTGGTGATCAAGGGTTCTTGGAGCAGTTAATGGGGTGGATTGAAACCCCTGATATTAGTGATCATCAAGGTGAGGGTTCAAGGAGTAAGAGGTTCAAGGTGTCTTCTTCTGTGCTTGTGCCACCTACTTTCACTGGCTCTTCTTATGATTGTGGATCCCCTTTTAGTgGGTTTCTATCGCAAACCCTCCCTCCCTCCAACCAGGTCGCGTGCAAAGGGATTTCGAAGCTTCGGAAGAAAAAAATGAAACCTGTTTTCTGTGGAAACCTGGATTTCGACGCGCGTCAATCTGACGTGGAGAGGCTCTTCAGAAGATACGGCAAAGTTGATAGAGTTGACATGAAATCCGGGTTTGCTTTTGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGATCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCTGTTCATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAAGAGGACGCTACTAGAGCTTTGGAGGCCACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATTAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCTAGTCCTTATCGTAGAGGTCGGGGTAGCCCAGATTATGGTCATGGATCAAATCCATCTTCCAGACCAGATCCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATAAATAATGGGAGATATGATAGCCGATCTCCCCCACCCCGAGAAAGTTGCTCATTCTTAAAGAAACAGTGGGGAACTACAGTGATAGCTCTTGACAGGATCAAGTCTTTTGAAGATTTAGCAACTCAGACCACTCCACCGAAATTTGAAAACATGGTGGAAGCAACTCAAGTTAGTAAAGATAAAGATGCGGCTGCATTTGAAGCCCGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTTGCTCTTGCTAATGCAAGGGAGGTTAAGGGGTTTCCTGGTAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCATTACGTTTATCGGACTTGTCGAGCCACCCTTGTTTCTCCAGGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTTAGAGAAGCCATTGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTACGAGGGAAAGCTTCGGATGCAGAGTGATCTTGATGCATTGATTGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACGGGGGTGCTTGGTGAAGCTAGTTTGCCATTAACCGTGTTAGGTTCTATGGCAGAATCAGATATTGCAACACACAACAATATAAGAGAACTACTTGCACGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCCTTAGACAGACTCTATGATGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTATTTTTGGTAGGAGCAATGTTGCTGCTTTGGTTCAATTGCTCACAGCAACATCTCCACGGATAAGGGAGAAGACAGTTAGTGTTATATGCTCTCTCGTGGAGTCGGGAAGCTGTGAAAAGTGGCTAGTTTCTgaaggagttctgccacctcttataaggcttgttgaatctggtagtgctgtgggtaaagagaaggctactgtatctcttcagagattgtcaatgtcagcagaaacaacgcgtgcaattgttggacACGGTGGTGTTCAGCCATTGATTGAGCTTTGTCAAAATGGTGATTCTGTGTCACAGGCTGCTGCTGCCTGTACTTTGACAAATGTATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAAGGAATTGTGAGGGTTATGATTAATCTTCTTAATTATGGAATTTTATTAGGTTCCAAAGAGTATGCAGCAGAATGCTTGCAGAATCTCACTTCAAGCAATGAGCATCTGAGGAAGTCTGTTGTATCAGAAGGTGGTGTTAGGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCCCAAGAATCCGCAGTTGGAGCTTTGAAAAATCTGGTTGGATCAGTTTCCGAGGAAACTTTAGTTTCTCTTGGTTTGGTTCCCTGTTTGGTTCACGTGCTGAAGTCTGGATCGTTGGGTGCTCAACAAGCTTCTGCGTCTATCATCTGCCGTGTTTGCAGTTCAATGGAGATGAAGAAAATAGTTGGTGAAGCTGGGTGCATCCCTCTTCTTATAAAGATGCTTGACGCTAAATCAAATACTGCTAGAGAGGTTGCTGCTCAAGCGATTTCAAGCCTAATGGTTCTGTCCCAGAATCGGAGAGAGGTTAAGAAGGATGATAAAAGTGTGCCAAATCTGGTCCAGTTGCTGGATCCAAGTCCTCAAAACACTGCAAAAAAGTATGCAGTTTCTTGCCTTGGATCACTTTCTCCGAGTAAGAAATGTAAGAAACTGATGATTTCTTATGGAGCAATCGGGTATCTGAAGAAGCTTACAGAGATGGACATTGTAGGAGCTAAAAAGTTACTTCAGCGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 3525 0.406 MAGAEATKYASSATSPTTTAANNMATKSNKPTIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPVSQVILGQQQSGSNNNLSTGSDIGKHGLSFASLKAKLSKNLQNIMARASDHNNNNKSSKSRVSDHFTFASIFHRRSYQIPEGDTMKNIDKVVQPSIIVPPMEAGGVGDYNSSVANWESASSVSDCSSEWVGFGNSKLGLESDGYEIGEASVGDQGFLEQLMGWIETPDISDHQGEGSRSKRFKVSSSVLVPPTFTGSSYDCGSPFSGFLSQTLPPSNQVACKGISKLRKKKMKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVHARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPDPRGSPKYERAESPINNGRYDSRSPPPRESCSFLKKQWGTTVIALDRIKSFEDLATQTTPPKFENMVEATQVSKDKDAAAFEARSTEDWLLHAQELVPVALANAREVKGFPGRWKMIISKLEQIPLRLSDLSSHPCFSRNALCKEQLQAVSKTLREAIELAELCVKEKYEGKLRMQSDLDALIGKLDLNLKDCGLLIKTGVLGEASLPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAIFGRSNVAALVQLLTATSPRIREKTVSVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVGKEKATVSLQRLSMSAETTRAIVGHGGVQPLIELCQNGDSVSQAAAACTLTNVSAVPEVRQALAEEGIVRVMINLLNYGILLGSKEYAAECLQNLTSSNEHLRKSVVSEGGVRSLLAYLDGPLPQESAVGALKNLVGSVSEETLVSLGLVPCLVHVLKSGSLGAQQASASIICRVCSSMEMKKIVGEAGCIPLLIKMLDAKSNTAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSPSKKCKKLMISYGAIGYLKKLTEMDIVGAKKLLQRLERGKLRSLFSRK 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00707 1174 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Gma07g00707 1174 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 851 893 IPR000225 GO:0005515
Gma07g00707 1174 MobiDBLite consensus disorder prediction 494 574 - -
Gma07g00707 1174 Gene3D - 766 1004 IPR011989 -
Gma07g00707 1174 SMART rrm1_1 421 487 IPR000504 GO:0003723
Gma07g00707 1174 SMART rrm1_1 327 394 IPR000504 GO:0003723
Gma07g00707 1174 Coils Coil 127 147 - -
Gma07g00707 1174 MobiDBLite consensus disorder prediction 494 516 - -
Gma07g00707 1174 SUPERFAMILY RNA-binding domain, RBD 328 495 IPR035979 GO:0003676
Gma07g00707 1174 Gene3D - 1005 1152 IPR011989 -
Gma07g00707 1174 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Gma07g00707 1174 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Gma07g00707 1174 CDD RRM2_AtRSp31_like 421 490 - -
Gma07g00707 1174 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 616 1174 - -
Gma07g00707 1174 MobiDBLite consensus disorder prediction 8 29 - -
Gma07g00707 1174 SUPERFAMILY ARM repeat 770 1149 IPR016024 -
Gma07g00707 1174 MobiDBLite consensus disorder prediction 396 418 - -
Gma07g00707 1174 CDD RRM1_AtRSp31_like 326 397 - -
Gma07g00707 1174 Gene3D - 411 538 IPR012677 -
Gma07g00707 1174 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 616 1174 - -
Gma07g00707 1174 CDD AP2 35 94 IPR001471 GO:0003700|GO:0006355
Gma07g00707 1174 Pfam Armadillo/beta-catenin-like repeat 1046 1082 IPR000225 GO:0005515
Gma07g00707 1174 Pfam Armadillo/beta-catenin-like repeat 883 921 IPR000225 GO:0005515
Gma07g00707 1174 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Gma07g00707 1174 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Gma07g00707 1174 Gene3D - 318 410 IPR012677 -
Gma07g00707 1174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 420 491 IPR000504 GO:0003723
Gma07g00707 1174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 398 IPR000504 GO:0003723
Gma07g00707 1174 SMART arm_5 1004 1043 IPR000225 GO:0005515
Gma07g00707 1174 SMART arm_5 799 839 IPR000225 GO:0005515
Gma07g00707 1174 SMART arm_5 1085 1127 IPR000225 GO:0005515
Gma07g00707 1174 SMART arm_5 965 1003 IPR000225 GO:0005515
Gma07g00707 1174 SMART arm_5 922 963 IPR000225 GO:0005515
Gma07g00707 1174 SMART arm_5 881 921 IPR000225 GO:0005515
Gma07g00707 1174 SMART arm_5 1044 1084 IPR000225 GO:0005515
Gma07g00707 1174 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Gma07g00707 1174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 422 484 IPR000504 GO:0003723
Gma07g00707 1174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 387 IPR000504 GO:0003723
Gma07g00707 1174 MobiDBLite consensus disorder prediction 396 410 - -
Gma07g00707 1174 SUPERFAMILY DNA-binding domain 36 92 IPR016177 GO:0003677
Gma07g00707 1174 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00707 Gma-Chr7 7420022 7436441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00707 26 92 AP2-EREBP Transcription Factor Family AT5G19790 68.657 3.12e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma07g00707 RRM_1 1.6e-11 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00707 - - gmx:100798922 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00707 07 7420022 7436441 Gma07g00707 07 7420022 7436441 ECH
Gma07g00707 07 7420022 7436441 Gma03g00150 03 1820198 1829253 ECH