Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00682 ATGTGCGGAAGAAAGTTACTGCAGAAACCAAATGGTGCTGAAACTCGTAGTATAGGAAGCACAATTGACAATACCGTGTTGGAGCCTATTGGGAATGGTGGTTATTATGCTTATGCAGACACGTATTATAGCAGCTGCAATTTTTTGGAATTAGGATTCTTTCCAGTTTCCATAGGTTTAGAAAGAGAAGCTTCACCCATATCAGATGATAGTTGTCCTATTTTCACATTTTTTTTAAAGTTTGATGGAATTGGAGACTATAGTAAGTCCCTAAATGGAAGTCCACCAGAAGCAATTCCTATTGCATTGGAAGGAAAAGATGTGACAGGACTTGCCCAAACTGGTTATGGTAAGACTGGAGCTTTTGCTCTTCCCATATTGCATGCCCTCTTAGAAGCACCACGCCCAAAACATTTCTTTGATTGTGTGTTGTCTCCCACAAGAGAACTTGCCATTCAAATTGCGGAGCAGTTTGAAGCTCTAGGCTCTGAATTGCTTGTTGGAGGAATTGACATGGTACAACAATCCATCAAGATAGCAAAGCAACCTCATATTATTGTTGGGACTCCCAGACGAGTTTTAGATCACCTAAAACACACCAAAGGATTTTCTCTTGGTAGATTAAAATACTTGGTCTTAGATGAGGCAGATAGGTTGTTGAATGAGGACTTCGAGGAATCACTTAATGAGATTTTACAAATGATTCCTCGTGAGCGAAAGACATTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAGAAGCTGCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCATCATCTAAGTATTCCACTGTTGACACATTGAAGCAGCAATATCTCTTTTTGCCTGCCAAACACAAGGATTGCTACTTTGTTTACATTCTCACTGAAATGTCTGGAAGTACATCAATGGTGTTCACTTGCACTTGTGATGCAACTCGGCTTCTAGCTTTGATCCTTAGGAATCTTGGTCTGAAGGCCATCCCAATTAATGGTCATATGAGCCAGTCAAAGAGACTTGGAGCCTCGAATAAGTTCAAATCTGGGGAATGCAATATTCTCCTTTGTACCGATGTAGCTAGTAGAGGACTGGATATTCCAACTGTAGATATGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGTGTGGGAAGGACTGCTCGTGCAGGGCGCTTTGGGGTTGCCATTTCCCTTGTAAATCAGTATGAGCTGGGGTGGTACATTCAAATAGAGAAGCTTATAGGCAACAAGCTACCAGAGTATCCTGCACAAGAAGAGGAAGTTCTACTTTTGGAAGAGCGTGTTAGTGAGGCCAAAAGATTAGCTGTCATGAAAATGAAGGAGACTGGAGGGAAGAAGAAACGAAGGGGCGAAGAAGATTACGATGGGGAGGATATAGACAAGTACTTGGGTCTCAAGGAAGGAAAATCATCCAAAAAGTTTAGAAGATGA 1476 0.4106 MCGRKLLQKPNGAETRSIGSTIDNTVLEPIGNGGYYAYADTYYSSCNFLELGFFPVSIGLEREASPISDDSCPIFTFFLKFDGIGDYSKSLNGSPPEAIPIALEGKDVTGLAQTGYGKTGAFALPILHALLEAPRPKHFFDCVLSPTRELAIQIAEQFEALGSELLVGGIDMVQQSIKIAKQPHIIVGTPRRVLDHLKHTKGFSLGRLKYLVLDEADRLLNEDFEESLNEILQMIPRERKTFLFSATMTKKVQKLQRVCLRNPVKIEASSKYSTVDTLKQQYLFLPAKHKDCYFVYILTEMSGSTSMVFTCTCDATRLLALILRNLGLKAIPINGHMSQSKRLGASNKFKSGECNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRFGVAISLVNQYELGWYIQIEKLIGNKLPEYPAQEEEVLLLEERVSEAKRLAVMKMKETGGKKKRRGEEDYDGEDIDKYLGLKEGKSSKKFRR 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00682 491 CDD SF2_C_DEAD 278 407 - -
Gma07g00682 491 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 212 220 IPR000629 -
Gma07g00682 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 419 IPR027417 -
Gma07g00682 491 Pfam Helicase conserved C-terminal domain 293 398 IPR001650 -
Gma07g00682 491 Gene3D - 96 271 IPR027417 -
Gma07g00682 491 PANTHER RNA HELICASE 97 478 - -
Gma07g00682 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 437 IPR001650 -
Gma07g00682 491 Gene3D - 272 444 IPR027417 -
Gma07g00682 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 266 IPR014001 -
Gma07g00682 491 Pfam DEAD/DEAH box helicase 97 255 IPR011545 GO:0003676|GO:0005524
Gma07g00682 491 PANTHER BNAC02G41920D PROTEIN 97 478 - -
Gma07g00682 491 SMART ultradead3 87 281 IPR014001 -
Gma07g00682 491 SMART helicmild6 317 398 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00682 Gma-Chr7 7091970 7102328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00682 98 430 Eukaryotic Initiation Factors Gene Family AT3G19760 30.904 8.31e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00682 K14777 - gmx:100775796 711.064