Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00672 ATGTCATTCACAGGAACTCTTGATAAATGCACAGCATGTGACAAGACTGTCTATGTGGTTGACTTGTTAACTCTTGAAGGAATTCCTTACCATAAAAACTGCTTCAAGTGCAGTCACTGCAAGGGATGTCTTACGATGTGCACATACTCCTCAATGGATGGAATTCTTTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGGTAAGACGAAGACCATCTTTTGGCCAATCTTTTTAACCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCAGGACAAATGCTCAGTTTGTACAAAAACAGTATATCCTCTGGAAAAGATGACACTTGAAGGGGAATGCTTCCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAACTATGCTGCCCTTGATGGTGTTCTCTACTGCAGGGTCCACTTTGCACAACTTTTCATGGAGAAAGGGAACTACAACCATGTGCTCCAAGCTGCTGCACACAGGAGGACTGGTTCCTCTACACCTCCACTACTAGAGGAGCCATCACAAGAGCCAGCACCACCAGCATCTCATGAGGACCAAACAGAAGAAGAGACACCTCTTGAATGA 633 0.4471 MSFTGTLDKCTACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGCLTMCTYSSMDGILYCKTHFEQLFKESGNFSKNFGKTKTIFWPIFLTPSKLSSMFSGTQDKCSVCTKTVYPLEKMTLEGECFHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYNHVLQAAAHRRTGSSTPPLLEEPSQEPAPPASHEDQTEEETPLE 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00672 210 Gene3D Cysteine Rich Protein 5 72 - -
Gma07g00672 210 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gma07g00672 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gma07g00672 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Gma07g00672 210 SMART lim_4 103 155 IPR001781 -
Gma07g00672 210 SMART lim_4 9 61 IPR001781 -
Gma07g00672 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Gma07g00672 210 Pfam LIM domain 104 159 IPR001781 -
Gma07g00672 210 Pfam LIM domain 10 65 IPR001781 -
Gma07g00672 210 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Gma07g00672 210 PANTHER OS06G0237300 PROTEIN 1 206 IPR045268 GO:0051015
Gma07g00672 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 170 - -
Gma07g00672 210 MobiDBLite consensus disorder prediction 177 210 - -
Gma07g00672 210 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 206 - -
Gma07g00672 210 Gene3D Cysteine Rich Protein 98 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00672 Gma-Chr7 6968663 6970649 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma07g00672 LIM 3.4e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00672 - K09377 gmx:100305845 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00672 07 6968663 6970649 Gma07g00672 07 6968663 6970649 ECH
Gma18g02126 18 54947176 54949110 Gma07g00672 07 6968663 6970649 PCT
Gma09g02393 09 49274543 49276337 Gma07g00672 07 6968663 6970649 PCT
Gma07g00672 07 6968663 6970649 Gma18g02126 18 54947176 54949110 PCT
Gma07g00672 07 6968663 6970649 Gma09g02393 09 49274543 49276337 PCT