Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00661 ATGGATCGAGGGGACCAAATGACATTTCCTGGCTCTGCATCTTACTATATGCAGAGAGGAATACCTGGTGCTGGAAATCAACCTGAACTGCACAATTCACCTAATATTCGACCGTTGTCTAATTCGAATCTACCGTTTCAATCAAGCATTGGGGGTGGTGGTACCATTGGATCCACATTACCATTAGAGTCGTCGGGAATTTCAGCTCCATGTGTCAATGTGAGTGCTCCTTCTGGGGCTGTGCCTGGGGAAACTGTCAAAAGAAAGAGAGGAAGGCCTAGAAAATATGGGCCCGATGGAGCTGTGTCGTTGGCATTGACTCCGACACCGGCTAGTCATCCTGGAGCCTTGGCACAAGGCCAGAAACGGGGCAGAGGGCGCCCGCCTGGGTCTGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGACATTGCAACAAAAATCATGGCATTCTCTCAGCAGGGGCCTAGAGCTATATGTATTTTGTCAGCCAATGGTGCCGTTTCTACTGTGACACTTCGTCAGCCTTCAACATCAGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATAGTGTGCCTGTCAGGCTCTTACTTGGTTGCCGATAGTGGTGGCACCCGCAATCGAACTGTTGCATTAAGTGTTTCACTTGCAAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGAGTGCTTATTGCTGCAAGTCCAGTTCAGGTGATACTTGGGAGCTTTTCATGGGGTGCATCAAAGACAAAGATAAAGAAAAAAGAAGGTTCAGAAGGTGCAGAAGTTGCTATGGAGACTGATCATCAGACGGTTCATAATCCAGTTGCAGTGAATAGTATTTCCCCAAATCAAAATCTTACTCCAACCTCATCTCTAAGTCCTTGGCCTGCATCGCGACCATTGGATATGCGCAATTCCCATATTGACATTGATTTAATGCGCGGGTGA 1023 0.4809 MDRGDQMTFPGSASYYMQRGIPGAGNQPELHNSPNIRPLSNSNLPFQSSIGGGGTIGSTLPLESSGISAPCVNVSAPSGAVPGETVKRKRGRPRKYGPDGAVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVADSGGTRNRTVALSVSLASPDGRVIGGGVGGVLIAASPVQVILGSFSWGASKTKIKKKEGSEGAEVAMETDHQTVHNPVAVNSISPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00661 340 CDD DUF296 153 267 IPR005175 -
Gma07g00661 340 MobiDBLite consensus disorder prediction 72 137 - -
Gma07g00661 340 MobiDBLite consensus disorder prediction 304 321 - -
Gma07g00661 340 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Gma07g00661 340 MobiDBLite consensus disorder prediction 1 50 - -
Gma07g00661 340 MobiDBLite consensus disorder prediction 304 323 - -
Gma07g00661 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 316 IPR039605 GO:0003680
Gma07g00661 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 275 - -
Gma07g00661 340 MobiDBLite consensus disorder prediction 28 50 - -
Gma07g00661 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 316 - -
Gma07g00661 340 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Gma07g00661 340 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Gma07g00661 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Gma07g00661 340 Gene3D - 154 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00661 Gma-Chr7 6825444 6832122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00661 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.833 1.29e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00661 - - gmx:100799791 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00661 07 6825444 6832122 Gma07g00661 07 6825444 6832122 ECH
Gma18g02135 18 55008684 55014683 Gma07g00661 07 6825444 6832122 PCT
Gma09g02382 09 49186702 49194001 Gma07g00661 07 6825444 6832122 PCT
Gma07g00661 07 6825444 6832122 Gma18g02135 18 55008684 55014683 PCT
Gma07g00661 07 6825444 6832122 Gma09g02382 09 49186702 49194001 PCT