Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00645 ATGGCTATGGTGAGTTCTATGCCTGCAACTCCACCACAGGTCAATCCTGTGAACTCACTTCGTGATATTGGAGTTCCTGGAATCATGACCAGCAGGAGAAAAATTGTAAATAAGCCTAGTCCAAGTATGGTTAATGACACAATCTATGTTGCTGTGGGAAAGAATGTGAAAAGTAGCAAATCAAATCTCATATGGGCAATACAGAACTCTGGAGGAAGGAGAATTTGCATTCTTCATGTTCACGTGCCAGCACCTATGATCCCCTTGATGGGTGCCAAATTTCCTGCTAGTGCGCTGAGAGAGGAGGAAGTTCAAGATTACCACGAAACAGAAAGGCTAAAAATGTACAAGACTCTGGATGCCTATCTTTCTATCTGTCAAGGGATGGGGGTGCGTGCAGGGAAACTACAAATTGAAATGGATTGCATAGAAAAAGGAATTGTTGAACTCATCTCCCAGTATGGCATACAGAAGCTTGTGATGGGAGCAGCATCAGATAAGTACCATTCAAGGAGGATGACGGCCCCCAGGTCTAAGAAAGCTATATATGTATGTGAACAAGCTCCAGCCTCTTGTCATATACAGTTTATCTGCAACGGCTACCTCATACACACAAGGGATTGCAGTTTGGATATAGGGAATGTAGAGGTTGCATTTCCTATGGCGCAGCAAATGGCAAACTCTGAAGTTGGAGGTTCTCCTAAATTGAGATCCCAATCAATTGTGCAAGGGCAAAATCATGGGATAAAACTAACTAATCCAGCTCAAGAGTTATTTCGTAGAGTAAGGTCTGTCAATGATGGACATAGGAGGAGCCTTGCATCTGTTTCTGATGAGTCATATGGGCAGTCAGGGAGGAGTCCTTCAGTTTTCTCAATGTGCTCTCACAGTATTTCAGTTGAACCAGGATTGACCCCAAATTTGATAAGTGATGGCAGTGAGAATGAATTAGACTTGACTTTGAATGGCCCTTTTCTGATTAACAAGAATCTTCATCATTCAGCATCTCCTAGTGAAATGGATGGAGGAATGGATGATGCTCTCTATGATCAACTTGAACAGGCAATGGCTGAGGCTGTGAATTCTAAGCGGGATGCATATCAAGAAACTGTTAGGCGTGGGAATGCTGAAAAAAATGCCATTGATGCTATTCGCAGGGCTAAAACCACTGAAAACTTGTATAAAGAAGAGCTGAAACTAAGGAAAGAACAAGAAGAAGCGGTAGAGAAAGCAAATGAAAAACTTAATAATATGAAGAGCCAGACAGACAAAGTTAATGAGGAACTCCGACTTGCCTTATTTCAGAACTCATCACTAGAGAATCAAATTGCATCAACTGAACTTATGATAAAGGAGTTGGAGCAAAAGATTATATCTGCCGAGAACCTGTTACAAAACTACAAGGATGAACTAGATGATTTGCAAATACAGCGTGATATTGCAGTGGGAGAGGCTGAGGAGTTTAGGAGAAAACAATGGGAAGCCTCATCAAGCGCACACAAGCTTCAATGCTTCTCAGAATTTTCCTTTCAAGAGATTAAAGAAGCAACAAGTAACTTCAATCCATCCCAGAAGATCGGAGAAGGCGGATATGGAAGTATATTTAAAGGTATCTTGCGTCACGCTGAGGTGGCTATAAAAATGTTGAATCGTGACAGCACGCAAGGACCTGAGGAGTTTCAACAGGAGGTTGAAGTATTGAGCAAGTTAAGGCATCCCAATATTATCACACTTATAGGAGCCTGCCCAGAATCTTGGACTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGCAAGGATAACTCACCTCCATTATCATGGCAAACTCGAATTCGCATTGCTACGGAACTTTGTTCTGCTCTCATTTTTCTTCACTCCAATAAACCTCACAGCATAGCGCATGGTGACCTAAAACCCGCCAATATTCTCCTTGATGCAAACCTTGTTAGCAAGCTCAGTGACTTTGGAATCTGCCGTATATTATTATCCTGTCAAGACAGTTCCAGTAACAGTACTACACAGTTTTGGAGGACTGATCCAAAGGGAACTTTTGTGTATTTGGATCCTGAATTCCTTGCTTCTGGTGAACTTACACCAAAGTCGGATGTTTATTCATTTGGAATCATTCTGTTGAGATTGATGACTGGGAAACCAGCCCTGGGAATAATAAAAGAAGTGCAATATGCATTAGATGCTGGAAAGTTGAAATCAATCTTGGATCCTTTTGCTGGAGACTGGCCATTTATGCTGGCTGAAGAGTTGGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAATCGGAAGAGCCGGCCAGACCTTTATCCAGATGTTTGGAGGATACTGGAACCAATGAGGGCTTCTTCTGGAGTCACAAACACCTTTCAACTGGGTTCTCAAGGGCTATGCCAACCTCCTCCATATTTTATTTGTCCAATCTTTCTGGAAGTCATGCAAGATCCACATGTAGCCGCTGATGGTTTTACTTATGAAGCTGAGGCTATACGTGAATGGCTAGAAAGTGGTCATGACACTTCACCAAGGACAAATTCCAAGCTTGCTCATCGCCATCTTGTTCCCAACCATACTCTTCGCCACGCAATTCAGAACTGGCTTCAAAGTCACTGA 2640 0.4246 MAMVSSMPATPPQVNPVNSLRDIGVPGIMTSRRKIVNKPSPSMVNDTIYVAVGKNVKSSKSNLIWAIQNSGGRRICILHVHVPAPMIPLMGAKFPASALREEEVQDYHETERLKMYKTLDAYLSICQGMGVRAGKLQIEMDCIEKGIVELISQYGIQKLVMGAASDKYHSRRMTAPRSKKAIYVCEQAPASCHIQFICNGYLIHTRDCSLDIGNVEVAFPMAQQMANSEVGGSPKLRSQSIVQGQNHGIKLTNPAQELFRRVRSVNDGHRRSLASVSDESYGQSGRSPSVFSMCSHSISVEPGLTPNLISDGSENELDLTLNGPFLINKNLHHSASPSEMDGGMDDALYDQLEQAMAEAVNSKRDAYQETVRRGNAEKNAIDAIRRAKTTENLYKEELKLRKEQEEAVEKANEKLNNMKSQTDKVNEELRLALFQNSSLENQIASTELMIKELEQKIISAENLLQNYKDELDDLQIQRDIAVGEAEEFRRKQWEASSSAHKLQCFSEFSFQEIKEATSNFNPSQKIGEGGYGSIFKGILRHAEVAIKMLNRDSTQGPEEFQQEVEVLSKLRHPNIITLIGACPESWTLVYEYLPNGSLEDRLNCKDNSPPLSWQTRIRIATELCSALIFLHSNKPHSIAHGDLKPANILLDANLVSKLSDFGICRILLSCQDSSSNSTTQFWRTDPKGTFVYLDPEFLASGELTPKSDVYSFGIILLRLMTGKPALGIIKEVQYALDAGKLKSILDPFAGDWPFMLAEELVRLALRCCEMNRKSRPDLYPDVWRILEPMRASSGVTNTFQLGSQGLCQPPPYFICPIFLEVMQDPHVAADGFTYEAEAIREWLESGHDTSPRTNSKLAHRHLVPNHTLRHAIQNWLQSH 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00645 879 Gene3D Transferase(Phosphotransferase) domain 1 593 792 - -
Gma07g00645 879 CDD STK_N 47 200 - -
Gma07g00645 879 ProSitePatterns Protein kinases ATP-binding region signature. 526 547 IPR017441 GO:0005524
Gma07g00645 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Gma07g00645 879 ProSiteProfiles Protein kinase domain profile. 520 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma07g00645 879 Coils Coil 394 428 - -
Gma07g00645 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Gma07g00645 879 Pfam U-box domain 810 879 IPR003613 GO:0004842|GO:0016567
Gma07g00645 879 CDD RING-Ubox_WDSUB1_like 813 854 - -
Gma07g00645 879 SUPERFAMILY Protein kinase-like (PK-like) 500 778 IPR011009 -
Gma07g00645 879 Gene3D Phosphorylase Kinase; domain 1 489 592 - -
Gma07g00645 879 Coils Coil 349 369 - -
Gma07g00645 879 ProSiteProfiles U-box domain profile. 808 879 IPR003613 GO:0004842|GO:0016567
Gma07g00645 879 SMART serkin_6 520 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma07g00645 879 SMART Ubox_2 812 875 IPR003613 GO:0004842|GO:0016567
Gma07g00645 879 Coils Coil 436 491 - -
Gma07g00645 879 Pfam Protein kinase domain 522 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma07g00645 879 PANTHER U-BOX KINASE FAMILY PROTEIN 14 878 - -
Gma07g00645 879 SUPERFAMILY RING/U-box 805 878 - -
Gma07g00645 879 PANTHER OS02G0152300 PROTEIN 14 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00645 Gma-Chr7 6628151 6635315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00645 1 879 U-box Gene Family AT2G45910 53.794 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gma07g00645 Pkinase 9.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00645 - - gmx:100781596 1741.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00645 07 6628151 6635315 Gma07g00645 07 6628151 6635315 ECH
Gma07g00645 07 6628151 6635315 Gma03g00084 03 958727 964017 ECH
Gma18g02151 18 55229389 55236897 Gma07g00645 07 6628151 6635315 PCT
Gma09g02372 09 49067336 49073837 Gma07g00645 07 6628151 6635315 PCT
Gma07g00645 07 6628151 6635315 Gma18g02151 18 55229389 55236897 PCT
Gma07g00645 07 6628151 6635315 Gma09g02372 09 49067336 49073837 PCT