Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00623 ATGGGTTTTCCGGTCGGTTACGTGGAGGTGTTCTTCCCGAACCCGTTCCTGCACACGCTGGCCCTCCTCGGCCTCCTCCGAAACCTCGTATTCTTCCTCTTCCACCTCCTCGGACTCTCCGACTTCTTCGAAACCGAGGTCGCCTGGCCGGACCCCCGCCCCTCAGACACGGCGGAGGCACGGCCCCCCTCCGTGTCGGCGCTCCTGATCCGGGACCTCCTGCCCGTCGCCAAGTTCGGAGACTCCGACATTGCCGCCCGACAAAACGGCTGCGCCTGCGCGGTTTGCCTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGGTGCATGCGCAACTGCAAGCACATTTTCCACCGTACCTGCGTGGACCGTTGGATCGACCACGATCAGAAAACTTGCCCTCTCTGTAGGACCCCCTTTGTGCCAGATGATATGCTTGATGATTATAATCAACGCCTCTGGGCTGCTACTGGGGTTAACGAGTTTTACACCGATTACACTTCTTCTTTCTGA 510 0.5902 MGFPVGYVEVFFPNPFLHTLALLGLLRNLVFFLFHLLGLSDFFETEVAWPDPRPSDTAEARPPSVSALLIRDLLPVAKFGDSDIAARQNGCACAVCLFEFSEEEEIRCMRNCKHIFHRTCVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAATGVNEFYTDYTSSF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00623 169 ProSiteProfiles Zinc finger RING-type profile. 93 136 IPR001841 -
Gma07g00623 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 165 - -
Gma07g00623 169 SMART ring_2 93 135 IPR001841 -
Gma07g00623 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 141 IPR013083 -
Gma07g00623 169 Pfam Ring finger domain 92 136 IPR001841 -
Gma07g00623 169 PANTHER BRH1 RING FINGER PROTEIN 1 165 - -
Gma07g00623 169 SUPERFAMILY RING/U-box 92 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00623 Gma-Chr7 6391299 6391961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00623 1 168 C3H Transcription Factor Family AT1G63840 46.243 1.39e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00623 K16281 - gmx:100790975 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00623 07 6391299 6391961 Gma16g00306 16 3224620 3225230 GST
Gma18g02172 18 55441377 55442224 Gma07g00623 07 6391299 6391961 PCT
Gma09g02350 09 48892392 48893194 Gma07g00623 07 6391299 6391961 PCT
Gma07g00623 07 6391299 6391961 Gma18g02172 18 55441377 55442224 PCT
Gma07g00623 07 6391299 6391961 Gma09g02350 09 48892392 48893194 PCT