Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00583 ATGTCCTCCTTCAACCCCTTCTCTCCTCCTCCACCCACTGCCACCACCACCCCTTACCTCACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCCCTCGGCGTTCTCTTCCTCCTCTCCACCCTCATCCTCTCCTCCTACCTTTGCTGCCGCACCCTCCGCCGCCGCAACAACAACAACAACCGCCGCCACACCCCCGATGGCGTCGTGCTCCCGCGCGTGATCTTCGTACCCGAGGACGAGGATGACGACGACGACGACACCCGCCAGAACGACGTCGCCACCGGCCTCGACCAGGCCGTCATAAACTCCTACCCCAAGTTTCCATTCGTTAAGGAAGGTAATTACGACAGCACATGCTCGATCTGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCAGAGTGTCGACACTACTTTCATCTCTGTTGTCTCGACCCATGGCTCAAGCTTAACGGGTCCTGCCCCGTTTGCCGGAACTCCCCCATGCCGACGCCGCTGTCCACGCCGCTGCAGGAGGTCGTGCCGCTCTCGCAGTACGCCGATGCCAGGGCGAGGAGGTGA 573 0.6091 MSSFNPFSPPPPTATTTPYLTNLGFGYSIAIALGVLFLLSTLILSSYLCCRTLRRRNNNNNRRHTPDGVVLPRVIFVPEDEDDDDDDTRQNDVATGLDQAVINSYPKFPFVKEGNYDSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYADARARR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00583 190 SUPERFAMILY RING/U-box 101 167 - -
Gma07g00583 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 167 IPR013083 -
Gma07g00583 190 PANTHER RING-H2 FINGER PROTEIN ATL67 15 190 - -
Gma07g00583 190 Pfam Ring finger domain 119 162 IPR001841 -
Gma07g00583 190 SMART ring_2 120 161 IPR001841 -
Gma07g00583 190 PANTHER RING-H2 FINGER PROTEIN ATL67 15 190 IPR044289 GO:0016567|GO:0016740
Gma07g00583 190 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Gma07g00583 190 CDD RING-H2_PA-TM-RING 119 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00583 Gma-Chr7 5626211 5626783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00583 19 182 C3H Transcription Factor Family AT5G06490 37.912 7.40e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00583 - - gmx:100807783 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00583 07 5626211 5626783 Gma07g00583 07 5626211 5626783 ECH
Gma07g00583 07 5626211 5626783 Gma16g00278 16 2946016 2949930 GST
Gma18g02206 18 55856167 55856909 Gma07g00583 07 5626211 5626783 PCT
Gma09g02321 09 48613050 48614818 Gma07g00583 07 5626211 5626783 PCT