Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00543 ATGGCTACTGCAAATGGTGGGACTGGGACTGAGGAGCACAAGAGGAAATCTAATGATCTTTTTCTTAAGCAAGGGGGACACCAAATCATGCCAAGATCACCTAGATTGTGCACCCCTATTCGGAAGGAATGGCCGGAGGAGAGTTTGCCAAATGACAATGTGATTGGTTTGAATAGCTATGTTACTTCCTTAGCTGGATCTGGACCTCCTAGTTCTAGTTTTTGTTCCACAATTGATTCTGAACACATTGTTGAAGAGTTGCCTGTTAGGAATTATGAGAACCAGAATATAAACTTAGTTAACCATCCACATAATTCAAGACAGGCAAGGAATCAATTGACTATTGAGTCTAAGTATAATATCTTGAGTAGAGAAGTTGTACCCAAGGTTGAGGAACAGATGCCACTCAGGTTAAGCAAAGGACTTAAGGGAATTGATTCTGAATTTTGGGGCCTGAAGTCTCTGGCTGGCAAAAGTGTAAATCGTGACTCACTGAAAGTCTCAGAAGATATAAGCAGTATGGGCAAGGCTATCATCTCGAACAATGCACATCTTATTAGCAGTATAACTCAGAGTACTTCATCTGCATATAATTATCCTCAATTGATTGTAAAGCAAACAAGGAAGGGAAAAGGGGTTATTTGTGAAGATTTAAACAAAAGCTTCAGTATTGGAGGAGCACTTAAGAGTCAAGAGGATGAGAAACTTGGTTTTGCCGCTAAGTTTCAATCCGAGACACTGGTGAGATCAAATGTTGATGAGAATAATAAGCCTTTATTGGAAGGAACTTTCATGTCTGGTTGCAATGGACTCAACTTAAGAGACTGGCTGAAGTTCAAAGGACATAAAATGAATAAATCAGGAAGGATTCATATATTTAAGCAAGTATTGGAATTGGTTGATTTTGAACACTCTCAAGGACTCGTCTTGCTAGACTTTCGACCATCTTGTTTCACTTTATTGCCTTCAAGTAAAATTAAGTATATTGGTTCATTTGGCCAACAAGAGTTAGATTATGAAGTCATGACATGTAATGTGACTAGGAAAAGGCCTTTGGAACAGAATACCTGTGCTTGCCAGAGTTTGAGTACAAAGCAGAAAAAGCTCTGTGAGGAGACAGGATCTTCTAGGCAGCAGCATCACTGTACCAGTATTCATGGCTGCCAGACGACAGTAAATCAAACTGACTCCGACACAAACAGACCTGTGGAATCAAGGAGTAAAGAAAGTCTATGCCAAAATAATTCTACTTGTACTGAAGAAAAGCAGTTTATGTCTGTGCTTAATAAGTTAGAAGAGAAGTGGTATTGTAGTCCTGAAGTGCTCAACGATGGAGTTTGCACATTTTCATCAAATATTTATAGCCTTGGAGTTCTCCTTTTTGAGTTGCTGTGCAATATTGAGTCATGGGAGACACATTCAACTGCGATGTTGGATTTGTGTCATAGAATCTTACCACCTAAATTTCTAGCAGAAAATCCAAAGGAAGCTGGTTTTTGTCTTTGGCTTTTGCATCCTGAACCTTCTTCTCGCCCCAATGCCAGAATGATTTTAGACTCTGAAGTTATTCGTGAATCAAAGGAATCAAATTCTGTAGATGATGTTGGAATATCTGATGATGAGGCTGAAACAGAGCAATTACTAGATTTTCTAATTTTATTCAAAGAAGAAAAGAAAAAACGGGAAGCGAAGTTGAAAGAAGAGCTAAATTTATTGAATGAAGATATGAAGGAGGTAGAAAGAAGTTATTCATTTGTGACAGATTCAGTATTTCCTTTGGTGCAAATAAACAATCCTGAATTGAGAGGAGACAGTTTACATTTTCAAGATTCTTCCGGTTCAGACATTAGTAGATCCATTCGAAGGTTGTTTGGTTATGAAGAAAGATATATGAGTAACATAAATCAGCTAGAGAATTCTTACTTTTCCTCGAGATTTCGAGTCCTGCCAAAAGAAGCTTCATCTGTTTCAATCAATGATAAAAATGTGATGGAAAGTAGATGGAGGTTGCCTCAAGTAGAGAATGTTAATAAGGAGTCTAGAAGAATTCAGAGTTCTGTTGGTTGTCTAGGATCCTTCTTTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTTGAAGAGTGTGGCAGATTAAGGAATAGAGATTTGCTTAGTTCTGCCAATGTAATGTGTGCTTTAAGTTTTGACCGTGATGAGGATCACATTGCAGCAGGAGGAGTTTCAAAGAAAATCAAGATTTTCGACCTCAATGCTATTTCAAGCGATTCTGTTGACATCCAGTACCCAGTAGTTGAGATGTCAAATAAATCAAAGCTTAGTTGTGTGTGCTGGAACCCTTACATAAAAAATCATCTGGCATCTACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAGACACTGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTTTGTCAGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTGTGGAATATCAGTGAGAGAAATTCTCTGGGAACCATCTGGAACCCTGCCAATATATGCTGTGTTCAGTTCTCTGCTTACTCAACAAATCATCTATTTTTTGGATCTGCTGATTACAAGGTTTATGGCTATGATCTTCGTCACACTAGAATCCCTTGGTGCACATTAACTGGTCATGGCAAAACTGTTAGCTATGTAAAATTTATAGATGCTGAAGCAGTTGTCTCTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTGAAGAAAATCAGCTCTTCTGGTTTGTCATCTGATGCTTGTGCCGTGACCTTTAAAGGTCATAGTAATGAAAAGAATTTCGTGGGATTATCAGTTTTGGATGGATACATTGCATGGGGTTCAGAATCTAATGAGGTGTACTGTTATCACAAATCACTGCCGGTGCCAATTGCTACTCATAAATTTGAGTCAGTTGATCCTATTTCTGGCCATCTAAATAGTGGTGATAATAATGGACAGTTTGTTTCCAGTGTTTGCTGGAGAAAGAAATCTAACATGCTTGTTGCTGCCAACTCAGTTGGAATTGTGAAACTGTTGCAGATGGTCTGA 3108 0.3887 MATANGGTGTEEHKRKSNDLFLKQGGHQIMPRSPRLCTPIRKEWPEESLPNDNVIGLNSYVTSLAGSGPPSSSFCSTIDSEHIVEELPVRNYENQNINLVNHPHNSRQARNQLTIESKYNILSREVVPKVEEQMPLRLSKGLKGIDSEFWGLKSLAGKSVNRDSLKVSEDISSMGKAIISNNAHLISSITQSTSSAYNYPQLIVKQTRKGKGVICEDLNKSFSIGGALKSQEDEKLGFAAKFQSETLVRSNVDENNKPLLEGTFMSGCNGLNLRDWLKFKGHKMNKSGRIHIFKQVLELVDFEHSQGLVLLDFRPSCFTLLPSSKIKYIGSFGQQELDYEVMTCNVTRKRPLEQNTCACQSLSTKQKKLCEETGSSRQQHHCTSIHGCQTTVNQTDSDTNRPVESRSKESLCQNNSTCTEEKQFMSVLNKLEEKWYCSPEVLNDGVCTFSSNIYSLGVLLFELLCNIESWETHSTAMLDLCHRILPPKFLAENPKEAGFCLWLLHPEPSSRPNARMILDSEVIRESKESNSVDDVGISDDEAETEQLLDFLILFKEEKKKREAKLKEELNLLNEDMKEVERSYSFVTDSVFPLVQINNPELRGDSLHFQDSSGSDISRSIRRLFGYEERYMSNINQLENSYFSSRFRVLPKEASSVSINDKNVMESRWRLPQVENVNKESRRIQSSVGCLGSFFEGLCKFARYSKFEECGRLRNRDLLSSANVMCALSFDRDEDHIAAGGVSKKIKIFDLNAISSDSVDIQYPVVEMSNKSKLSCVCWNPYIKNHLASTDYDGVVQMWDADTGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSVKLWNISERNSLGTIWNPANICCVQFSAYSTNHLFFGSADYKVYGYDLRHTRIPWCTLTGHGKTVSYVKFIDAEAVVSASTDNSLKLWDLKKISSSGLSSDACAVTFKGHSNEKNFVGLSVLDGYIAWGSESNEVYCYHKSLPVPIATHKFESVDPISGHLNSGDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00543 1035 Coils Coil 555 582 - -
Gma07g00543 1035 Pfam WD domain, G-beta repeat 894 926 IPR001680 GO:0005515
Gma07g00543 1035 Pfam WD domain, G-beta repeat 804 842 IPR001680 GO:0005515
Gma07g00543 1035 ProSitePatterns Trp-Asp (WD) repeats signature. 913 927 IPR019775 -
Gma07g00543 1035 ProSiteProfiles Trp-Asp (WD) repeats profile. 895 928 IPR001680 GO:0005515
Gma07g00543 1035 PRINTS G protein beta WD-40 repeat signature 786 800 IPR020472 -
Gma07g00543 1035 PRINTS G protein beta WD-40 repeat signature 829 843 IPR020472 -
Gma07g00543 1035 PRINTS G protein beta WD-40 repeat signature 913 927 IPR020472 -
Gma07g00543 1035 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 895 928 - -
Gma07g00543 1035 PANTHER PROTEIN SPA1-RELATED 2 1 1035 IPR044630 GO:0009640
Gma07g00543 1035 SMART WD40_4 714 749 IPR001680 GO:0005515
Gma07g00543 1035 SMART WD40_4 845 884 IPR001680 GO:0005515
Gma07g00543 1035 SMART WD40_4 802 842 IPR001680 GO:0005515
Gma07g00543 1035 SMART WD40_4 987 1033 IPR001680 GO:0005515
Gma07g00543 1035 SMART WD40_4 760 799 IPR001680 GO:0005515
Gma07g00543 1035 SMART WD40_4 937 976 IPR001680 GO:0005515
Gma07g00543 1035 SMART WD40_4 888 926 IPR001680 GO:0005515
Gma07g00543 1035 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 808 IPR001680 GO:0005515
Gma07g00543 1035 ProSiteProfiles Trp-Asp (WD) repeats profile. 809 851 IPR001680 GO:0005515
Gma07g00543 1035 PANTHER LIGASE COP1, PUTATIVE-RELATED 1 1035 - -
Gma07g00543 1035 ProSiteProfiles Protein kinase domain profile. 165 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma07g00543 1035 Gene3D Transferase(Phosphotransferase) domain 1 244 569 - -
Gma07g00543 1035 Gene3D - 693 1035 IPR015943 GO:0005515
Gma07g00543 1035 SUPERFAMILY Protein kinase-like (PK-like) 263 521 IPR011009 -
Gma07g00543 1035 SUPERFAMILY WD40 repeat-like 723 1031 IPR036322 GO:0005515
Gma07g00543 1035 ProSitePatterns Trp-Asp (WD) repeats signature. 786 800 IPR019775 -
Gma07g00543 1035 SMART serkin_6 203 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00543 Gma-Chr7 5261642 5268234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00543 806 990 Miscellaneous Gene Families AT5G08390 26.203 5.57e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Gma07g00543 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00543 K16240 - gmx:100799267 2066.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00543 07 5261642 5268234 Gma07g00543 07 5261642 5268234 ECH
Gma07g00543 07 5261642 5268234 Gma16g00244 16 2648527 2655532 GST