Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00524 ATGGGCATCTTGGAAGTCCTTTTTCCCTTCTTCGTCTTTCCTGTCATATATGCTGTTGCTACCTCAAATGATTGTCAATTTTCCGTATGTGGCAACAATAGTGTCCTTATTCGTTTCCCCTTTCAACTAGATGGTGATCGAAATCCTTATTGTGGCTATCCTGGTTTCAACTTAACTTGTACGAATAATAGCAAAACAGTGCTAAAACTTCCATACTCTGGTGCATTCTATGTGCGCAGCATCAACTACCTCACACAAAAGATACAAGTCTACGACCCTGATGATTGCCTCCCCAAACGTCTTTTGACCCTCAATGTCTCAGGTTCTCCTTTCATTCCCACTTTTACTCGTGACTACACCTTCTTAAGCTGCCCATTTCAGAACGCAGGGTCACAATTCATTCCCATAGACTGCCTCAGTAATTCCACAAATTTTGTATCAGCTGTCCCTACTCTAAACTTGACCAATCCATTGCCTGAGTCTTGCAATGTTATTACAAGGGTTTCAGTCCCAGTTTCAGGGCCAGAGCAACAATATGAGGAGAATCACAGAGATGAGCTTAGTGAAGATCTTCGATTAACTTGGGATAGACCTGACTGCAGATATTGTGAATCGGGACAGCAATTGTGTGGATTTGATCCAGATAACAACGGTCAACTCTTCTGTTTTCCTGGTTACCAAACAGTTACTTCAAGACGTGGAGCCCAAGTTTTCAGAATCATCACATTTTGCATTGCTGGACCAGCAGCAGTCATTGCAATAGTGATGGCATGCTGTGTGTGCTACAAGGACAGACTAACCAACAGGTCTGCACTTGCAGCTACAATATCGCCGGTGCCACAAATCGCAACCACGGGTCTCGACGAGTCCACGATCGAGTCCTACGAGAAGATGGTGGTCGGAGAGAGTCGACGAGTTCCTGGACCCAACAACAATGGATGCTGTTGGATATGCTTGTCGGAGTACAACAGCAAAGAGACAATAAGATTGATTCCTGAATGCAAACACTGCTTCCATGCAGACTGCATAGACGAGTGGCTTCGAATAAACACCACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCCTCTTCATGTTACGTCCATTGACCCCTAA 1119 0.4504 MGILEVLFPFFVFPVIYAVATSNDCQFSVCGNNSVLIRFPFQLDGDRNPYCGYPGFNLTCTNNSKTVLKLPYSGAFYVRSINYLTQKIQVYDPDDCLPKRLLTLNVSGSPFIPTFTRDYTFLSCPFQNAGSQFIPIDCLSNSTNFVSAVPTLNLTNPLPESCNVITRVSVPVSGPEQQYEENHRDELSEDLRLTWDRPDCRYCESGQQLCGFDPDNNGQLFCFPGYQTVTSRRGAQVFRIITFCIAGPAAVIAIVMACCVCYKDRLTNRSALAATISPVPQIATTGLDESTIESYEKMVVGESRRVPGPNNNGCCWICLSEYNSKETIRLIPECKHCFHADCIDEWLRINTTCPVCRNSPSPSPLHVTSIDP 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00524 372 Pfam Wall-associated receptor kinase galacturonan-binding 25 92 IPR025287 GO:0030247
Gma07g00524 372 ProSiteProfiles Zinc finger RING-type profile. 315 357 IPR001841 -
Gma07g00524 372 SMART ring_2 315 356 IPR001841 -
Gma07g00524 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 362 IPR013083 -
Gma07g00524 372 CDD RING-H2_EL5_like 315 357 - -
Gma07g00524 372 Pfam Wall-associated receptor kinase C-terminal 155 223 IPR032872 -
Gma07g00524 372 Pfam Ring finger domain 315 357 IPR001841 -
Gma07g00524 372 SUPERFAMILY RING/U-box 310 359 - -
Gma07g00524 372 SMART ringv_2 314 357 IPR011016 GO:0008270
Gma07g00524 372 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 367 - -
Gma07g00524 372 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 5 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00524 Gma-Chr7 5044303 5046809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00524 23 363 C3H Transcription Factor Family AT2G46495 43.553 9.40e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00524 - - gmx:100794143 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00524 07 5044303 5046809 Gma07g00524 07 5044303 5046809 ECH
Gma07g00524 07 5044303 5046809 Gma16g00225 16 2430646 2437724 GST
Gma19g02408 19 52606419 52608358 Gma07g00524 07 5044303 5046809 PCT
Gma03g02366 03 48799544 48799987 Gma07g00524 07 5044303 5046809 PCT
Gma07g00524 07 5044303 5046809 Gma19g02408 19 52606419 52608358 PCT
Gma07g00524 07 5044303 5046809 Gma03g02366 03 48799544 48799987 PCT