Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00501 ATGAGGCCGATTTTTGCTGGGAACTTGGAGTATGATACTCGTCAATCAGAGCTCGAACGCTTGTTCGCAAAGTATGGAAGGATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCATGAAAAGCGAAGGCTATCAGTGGAGTGGGCTAGGGGTGAACGTGGACGTCATCATGATGGATCAAAGGCAAATCAGAAGCCAACAAAAACCCTGTTTGTGATTAACTTTGACCCAATCCGTACTAGAGTTCGTGATATAGAAAAACACTTTGAACCTTATGGGAATGTTCTTCACGTTCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACCAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTATCTGTGGAGTATGCTCTGAGGGATGATGGTGAGAGGGGTGACAATTATGACAGTCCTAGAAGAAGAGGGGGTTATGAGAGATCACCCAGTCCTTATCACAGGCGACCAAGTCCTGACTATGGTCGTCCACGCAGCCCTGTCTATGATAGGTACAATGGTGGTGGACCAGACATGCGGaggagtcctgattatggcaggcacaggagtcctgactatggcaggcgcaggagtcctgattatgggaagcccaggagtcctgaATACGGTAGATATCGCAGCTGTTCACGTTCGCCGGTGCGAAGGTCGAGAACATAG 780 0.4128 MRPIFAGNLEYDTRQSELERLFAKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHHDGSKANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRRGGYERSPSPYHRRPSPDYGRPRSPVYDRYNGGGPDMRRSPDYGRHRSPDYGRRRSPDYGKPRSPEYGRYRSCSRSPVRRSRT 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00501 259 MobiDBLite consensus disorder prediction 215 241 - -
Gma07g00501 259 SMART rrm1_1 92 158 IPR000504 GO:0003723
Gma07g00501 259 SMART rrm1_1 3 70 IPR000504 GO:0003723
Gma07g00501 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Gma07g00501 259 Gene3D - 1 83 IPR012677 -
Gma07g00501 259 Gene3D - 84 173 IPR012677 -
Gma07g00501 259 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 215 - -
Gma07g00501 259 MobiDBLite consensus disorder prediction 164 195 - -
Gma07g00501 259 MobiDBLite consensus disorder prediction 164 259 - -
Gma07g00501 259 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 215 IPR029537 GO:0000398|GO:0005681
Gma07g00501 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Gma07g00501 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Gma07g00501 259 SUPERFAMILY RNA-binding domain, RBD 3 164 IPR035979 GO:0003676
Gma07g00501 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00501 Gma-Chr7 4730096 4733064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00501 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.626 1.60e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00501 K12893 - gmx:100801043 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00501 07 4730096 4733064 Gma07g00501 07 4730096 4733064 ECH
Gma07g00501 07 4730096 4733064 Gma16g00198 16 2114532 2116994 GST