Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00490 ATGGAATATACTTATTCAGCAGGTGTAGAGGCAGAAACTCACACAAGTAGCAGCACCACCCCATCAAGATCAAAGAAGAGAAACAACAACACAAGAAGGTTCAGTGATGAACAAATCAAATCATTGGAGACCATGTTTGAATCAGAGTCAAGGCTTGAGCCTAGAAAGAAGTTGCAGCTGGCCAGAGAGCTTGGATTGCAGCCAAGGCAAGTTGCTATATGGTTTCAGAACAAGAGGGCTAGGTGGAAGTCAAAGCAACTTGAGAGAGACTATGGCATACTCCAATCCAATTACAACAGTTTGGCTTCCCGTTTTGAAGCTCTTAAGAAGGAAAATCAAACATTACTAATTCAGCTGCAGAAGCTGAATCATCTAATGCAGAAGCCAATGGAGCCAGGTCAGAGATGCACACAAGTTGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAAGCTGAGGGAAAGCCAAGCCCATCAATGGAAATATCAGAACATTTACTTGGTGTTCTGTCTGATGATGACACAAGCATAAAGGTGGAAGACTTTGGCCTAGAAGATGAACATGGCCTTCTGAATTTTGCTAAGCATGTTGATGGTTCCTTGACTTCACCAGAAGATTGGAATGCTTTTGAATCCAATGATCTATTAGGCCAATCAACCACTGATGATTACCAATGGTGGGACTTCTGGTCCTGA 717 0.4282 MEYTYSAGVEAETHTSSSTTPSRSKKRNNNTRRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKENQTLLIQLQKLNHLMQKPMEPGQRCTQVEAANSMDSESENGGTMKCEAEGKPSPSMEISEHLLGVLSDDDTSIKVEDFGLEDEHGLLNFAKHVDGSLTSPEDWNAFESNDLLGQSTTDDYQWWDFWS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00490 238 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Gma07g00490 238 CDD homeodomain 32 86 IPR001356 GO:0003677
Gma07g00490 238 MobiDBLite consensus disorder prediction 144 165 - -
Gma07g00490 238 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Gma07g00490 238 SMART HOX_1 23 89 IPR001356 GO:0003677
Gma07g00490 238 MobiDBLite consensus disorder prediction 1 38 - -
Gma07g00490 238 Gene3D - 12 94 - -
Gma07g00490 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 10 238 IPR045224 GO:0003700
Gma07g00490 238 SUPERFAMILY Homeodomain-like 14 87 IPR009057 -
Gma07g00490 238 Pfam Homeodomain 32 83 IPR001356 GO:0003677
Gma07g00490 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 10 238 - -
Gma07g00490 238 Pfam Homeobox associated leucine zipper 85 127 IPR003106 GO:0006355|GO:0043565
Gma07g00490 238 PRINTS Lambda-repressor HTH signature 56 65 IPR000047 GO:0003677
Gma07g00490 238 PRINTS Lambda-repressor HTH signature 65 81 IPR000047 GO:0003677
Gma07g00490 238 MobiDBLite consensus disorder prediction 9 25 - -
Gma07g00490 238 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00490 Gma-Chr7 4592830 4594486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma07g00490 33 238 Homeobox Transcription Factor Family AT3G61890 53.555 7.14e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma07g00490 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00490 K09338 - gmx:100797862 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00490 07 4592830 4594486 Gma07g00490 07 4592830 4594486 ECH
Gma07g00490 07 4592830 4594486 Gma16g00188 16 1972038 1972987 GST
Gma19g02437 19 52858644 52859033 Gma07g00490 07 4592830 4594486 PCT
Gma07g00490 07 4592830 4594486 Gma19g02437 19 52858644 52859033 PCT